BAC Information

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BAC

Clone NameMSMg01-125O11
Chromosome15 (Build37)
Map Location 62,020,805 - 62,021,011
singlet/doubletsinglet
Overlap genePvt1
Upstream geneMyc
Downstream geneLOC100040584, H2afy3, LOC100040430, Tsg101-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125O11.T7 (MSMg01no125_o11.b1)MSMg01-125O11.TJ (MSMg01no125_o11.g1)
ACCAG334865AG334866
length759731
length of high quality
(start - end)
207 (51 - 257)61 (147 - 207)
definitionCHROMAT_FILE: MSMg01no125_o11.b1 PHD_FILE: MSMg01no125_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:05 2005CHROMAT_FILE: MSMg01no125_o11.g1 PHD_FILE: MSMg01no125_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAGAGACT
GTAGTTCCACTAAGCTAATGTTCTAAGCACACGTGGAAGCAGGGGAGATG
TCATTGGACTTACTGTTGACCCAGCTTCCCAGTTTGTGACTACTGTATGC
CTTGTATGTCCTGGCTCAAATTGGTGTATCCATGGCAGGGACTTGAGTTG
ATTATTTTTACCCCGCAGACAGGGTAGTGCTGACCTCTAACTCTCAATCC
TTTTCCCTAAGTGTCTGGATTACAAATGTTTGTCTACACACCCAAACAAA
TTTTATTTTTTCAAGAATTACTCCCCGCGGCCATCTGGAGTCCATTGTAA
GTAAATTTCCCANAGCGAACCGCCTTGTTCTTTTATTATGTTTTTTATGA
TATGATGCCCCGAGGAAAATTTCACCTCAAAAATCATGGGGGGGGGGGGG
TGCTTTTTTTCCCCTTCGATTTGTTATTCCTCCCCACCATTTGTTGGCTA
TTTTTCCACCCTCATCCCGCCCATCTTCCCATTCCCTCTCTCCCCCTCTC
TCGCTTTTCCCACCTGACTCTTCACTACACTCCCACTGCACTTTGTCCCT
CGCGCAACTACCCCGCCTACCTACTTCGCCCTTGCTCATACTCCATATCC
CTTCTTCCTCTTCCCCCTTTTTCTTTTCTCTCCTTCGCCCTCTCCCTTTT
TTCCCCTCTTCTTTATCCCACTCCCCAAACTCTTACTCTCATATAACTAA
CACAACAGC
TGCTCCCTCAACGATGATACGAGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCCTGGGGAGAAG
TAAATAATACCTACATACCTCATCATGAGGTCTCCCGAGCCATTCAAAAT
ATCGGTTTCACCAAAGTTCACACTAGGGGATAGGGAGGAATATAAACATA
AATAGAGATCATAAATGAAGACTCGTGGTCTCTAAAGCAGCTACCCTGGA
AGGCCTGACTCTGAGCCCGACATGGATGGCAGTTCCCCAATGGTGCCATC
GAGACCATCTTCTGTCAGCTTTCCCCAGTCTGTGTAATGTAGCATGCTCA
TGACACCATGAGGACATCCAAATTTTTTTTACTCCCCCCCCCCGGGCTAG
TAAGAATGCTTGGATATTCATGTGAGGATTCAATGAAAAAAAATAAAGAA
CTCGTCGGGAGGAGGACGTTCACCTCGCCCCCGTGTCACCCACGCACCTG
GCACCACACCTCGCTTACATCACTGCTCTGCACCGCATATTCTATTACCC
CAGTCTTTCCCGCACCTCCCCACCCTTACTTGATGCACACCCCCCTTTTA
TATTGACCCGTCTCCTTTTCTCCCCTTTCTCACCCACGCACCTCTCCTCA
TTCCCCCCCCCCAATGTTTATCCTTCTTCCCGCTTTTCTCTCTGCAACCC
CCCCTTCCCCCCCCCCCAAGGCCCCCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_o11.b1 MSMg01no125_o11.b1 CHROMAT_FILE:
MSMg01no125_o11.b1 PHD_FILE: MSMg01no125_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:05 2005
         (207 letters)



>mm_chr15_62020605_62021211
          Length = 607

 Score =  393 bits (203), Expect = e-114
 Identities = 206/207 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagttccactaagctaatgttctaagcacacgtggaagcaggggagatgtcattggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtagttccactaagctaatgttctaagcacacgtggaagcaggggagatgtcattggact 260

                                                                       
Query: 61  tactgttgacccagcttcccagtttgtgactactgtatgccttgtatgtcctggctcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactgttgacccagcttcccagtttgtgactactgtatgccttgtatgtcctggctcaaa 320

                                                                       
Query: 121 ttggtgtatccatggcagggacttgagttgattatttttaccccgcagacagggtagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggtgtatccatggcagggacttgagttgattatttttaccccgcagacagggtagtgc 380

                                      
Query: 181 tgacctctaactctcaatccttttccc 207
           ||||||| |||||||||||||||||||
Sbjct: 381 tgacctcgaactctcaatccttttccc 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)