BAC Information

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BAC

Clone NameMSMg01-125P07
Chromosome15 (Build37)
Map Location 102,781,706 - 102,935,986
singlet/doubletdoublet
Overlap geneHoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Upstream geneKrt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12
Downstream geneLOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125P07.T7 (MSMg01no125_p07.b1)MSMg01-125P07.TJ (MSMg01no125_p07.g1)
ACCAG334904AG334905
length724725
length of high quality
(start - end)
476 (48 - 523)246 (72 - 317)
definitionCHROMAT_FILE: MSMg01no125_p07.b1 PHD_FILE: MSMg01no125_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:09 2005CHROMAT_FILE: MSMg01no125_p07.g1 PHD_FILE: MSMg01no125_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,935,607 - 102,935,986)(102,781,706 - 102,781,951)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATGGGCGG
AATTCATTCTTTATTTCCTCCAGAGTTTATAAACTTCCTACCAAACTCCT
CTCAAATGAATCTCACCTATCCAAGCATGGGGAAACCCCTTAACCTTGTA
GTCTTTTGGGGTAACTGATGGAAACGAGTGTAGTAAAGAATTTGCTAAGG
ATAGAAAAGTTTTCTTTAAGCAGTATATGGTGGTTTATGCCTGTAAATTT
CAGCACTCAAAAGGGTAAAGCAGGTAAAGTAGTCTGCTATGAGTTCAAGG
ACATCATGAACTACATAGGAAGTGCTAGGCCAGCCTAGGCTTTAGAGTGA
GACCTTGTCCCAGAAACAACAAAATCAAGGTTTTTCTTCTTATCAATGAA
GAAAACAAAGATTCCCCTCTCCTACCTGGTGGAACAGGCCCCCTCCTCTT
CCTTTTCCCATGTACCTATTAAGGAAGTCAAAACTGCTGAGCAACCTTGT
AGTGCAAAAGGCATATTTGACAGGTGATCAAACCAAGAAGCAGGGTCACA
GAGGTGAAGCACCCAGAGCCCATAGCAGGGTGGCCCAGTGTGATGATTCC
CTTTGGCATCAGGGTCAAGACAGAGCACTGTGGTCCTCAGGCTTTGGCCT
ACACTTGTTCAGCAACATCATCTTGGCTGGGTGATGGAGCACTGCAAGCC
AGTGAGATGGGCTGGGAAATGATN
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGGAAAGGTGAGGAAGAAAAGAGGCCACAA
GGCTGCCCAGAGCTGTTTTCAGGAGGTTGCTGTAAGAAGGGCCCATGACA
GAATTCGGCAGACAGTGCCCCCTTTTGAAACAGACCCTGTTGTCCTTGTG
TGGGAGGAAAGGCCGCTGGAGTCTGTCCTAGTTCTATCGAGACCACCGAG
GCGGCAGCAACCCAGATTGCAGAGGTCTGCTAGCGGCCAAGCTAGCAGGG
AGTAAGGCCACCAAAAATCTGTTTGTCGGTATAATGGCTATCACACGAAT
GCATTTAGGTGAAAGCTGGGAATCTGGAACAAAGCTGGTGAGGAACAAAC
AACAAATCAGTTGCCATCAGTAATGCCTGCGAGTGATGGGATGGGGGGCC
ACAGATGTGTCCCTCCATCCAAATGTAAAGGATGCTGTGGGCACATTCCA
GAGAGAGAGAGAGAGAGAGACAGAGATAGAGATAGAGAGAGATAGAGAGA
GAGAGATATAGAGCATCAGCTGACACATTGCTGTCTTAGCTTTACTCTCT
TGACCGTTTCCCGCTGTCTCGTCTCTCCCCTTTCTTCCCTACTCCCCCCC
TCCCCACCTTCCATCTTCTTCTCGCCTTCCACCCCTCATCGCTATTCTTC
CTCCCCAGCCTTTCTCCTCCTGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_p07.b1 MSMg01no125_p07.b1 CHROMAT_FILE:
MSMg01no125_p07.b1 PHD_FILE: MSMg01no125_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:09 2005
         (476 letters)



>mm_chr15_102935607_102936482
          Length = 876

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcattctttatttcctccagagtttataaacttcctaccaaactcctctcaaatga 62
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 gaattcattctttagttcctccagagtttataaacttcataccaaactcctctcaaatga 321

                                                                       
Query: 63  atctcacctatccaagcatggggaaaccccttaaccttgtagtcttttggggtaactgat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atctcacctatccaagcatggggaaaccccttaaccttgtagtcttttggggtaactgat 261

                                                                       
Query: 123 ggaaacgagtgtagtaaagaatttgctaaggatagaaaagttttctttaagcagtatatg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggaaacgagtgtagtaaagaatttgctaaggatagaaaagttttctttaagcagtatatg 201

                                                                       
Query: 183 gtggtttatgcctgtaaatttcagcactcaaaagggtaaagcaggtaaagtagtctgcta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gtggtttatgcctgtaaatttcagcactcaaaagggtaaagcaggtaaagtagtctgcta 141

                                                                       
Query: 243 tgagttcaaggacatcatgaactacataggaagtgctaggccagcctaggctttagagtg 302
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 140 tgagttcaaggacatcatgaactacataggaagtgccaggccagcctaggctttagagtg 81

                                                                       
Query: 303 agaccttgtcccagaaacaacaaaatcaaggtttttcttcttatcaatgaagaaaacaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  agaccttgtcccagaaacaacaaaatcaaggtttttcttcttatcaatgaagaaaacaaa 21

                               
Query: 363 gattcccctctcctacctgg 382
           ||||||||||||||||||||
Sbjct: 20  gattcccctctcctacctgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no125_p07.g1 MSMg01no125_p07.g1 CHROMAT_FILE:
MSMg01no125_p07.g1 PHD_FILE: MSMg01no125_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:09 2005
         (246 letters)



>mm_chr15_102781506_102782151
          Length = 646

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaaggtgaggaagaaaagaggccacaaggctgcccagagctgttttcaggaggttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaaggtgaggaagaaaagaggccacaaggctgcccagagctgttttcaggaggttgct 260

                                                                       
Query: 61  gtaagaagggcccatgacagaattcggcagacagtgcccccttttgaaacagaccctgtt 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaagaacggcccatgacagaattcggcagacagtgcccccttttgaaacagaccctgtt 320

                                                                       
Query: 121 gtccttgtgtgggaggaaaggccgctggagtctgtcctagttctatcgagaccaccgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccttgtgtgggaggaaaggccgctggagtctgtcctagttctatcgagaccaccgagg 380

                                                                       
Query: 181 cggcagcaacccagattgcagaggtctgctagcggccaagctagcagggagtaaggccac 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggcaacaacccagattgcagaggtctgctagcggccaagctagcagggagtaaggccac 440

                 
Query: 241 caaaaa 246
           ||||||
Sbjct: 441 caaaaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)