BAC Information

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BAC

Clone NameMSMg01-126H09
Chromosome15 (Build37)
Map Location 89,097,354 - 89,097,596
singlet/doubletsinglet
Overlap geneSaps2
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik
Downstream geneSbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-126H09.T7 (MSMg01no126_h09.b1)MSMg01-126H09.TJ (MSMg01no126_h09.g1)
ACCAG335270AG335271
length701700
length of high quality
(start - end)
364 (43 - 406)243 (71 - 313)
definitionCHROMAT_FILE: MSMg01no126_h09.b1 PHD_FILE: MSMg01no126_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:51 2005CHROMAT_FILE: MSMg01no126_h09.g1 PHD_FILE: MSMg01no126_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAA
TTCTATATCATGCTCCACAGGCAGCCAGGAGGAGGGTCTCATCTATGCTG
GGTGAAACCTGAGCATAGGAGACCTAAAAGTCCACTCCCACAGTGACATA
CTTTTCCAACAAGGCCACAATTCCTAATAGTGCCACTCCCCATAAATCAA
GCATTCAAATGAATCTATGGGGCCAAACCTATTCAAACCACCACAGCAGA
TTTCTTTGATGTTGTTCTGGAAGCAAGTTTTGATGAAACAGCTGCAGTCA
AGGTTGGATCAAGCAGGATGCTGGAATAAATATGTCTCAGCATCCTCAAG
GAGAATGTTGTAAGGGCTGCACTGACTTTACTGGTGTGTGCAGACATAAA
ATTCTCACACCCCCCATACATTTCTGAAATAAGATATGTATAGAATGTGC
AGTACACACACCTCAGTTAAAGATGGTCCCCTGCTCTGCTTAAGCAGGTC
AGGCACCTCTTTCTTTACCAGTTAGTTTGGATCGTATAAACAAACTGACA
TATAAATTTCTATCTATGCCACTTGAAATGATGCCCTGATAAACCCCAAA
TTACTCTGTAGCTCACAGATATTGGCTATGCACATCTGATCGTCTGCTTG
AAAAATTTTTACTCTTGAAAACAACCGGCCTCCTACCTCTTACATCCGCT
C
GATGCATGGGTAGGCCTGGCGGCGCCTGTTTCCTACTGGGGGTGAACTAT
AGAAGTTCCCAAAAATATCAAGTGGTCTTAGGATCCAAATTTAAATTCTG
GAAAGTGAAGCTTTCTTCCGGGCTCAGGCTGGCCCTGGGATCTCAGCAGG
TTAGATGTGGTCACAGCCACTTAAACAAAGACAGCCTGTGAGCCACAGAT
GAGAGAACAGATGTGGGGAGTCAGCAGCAGCAGAGCTTCTTTGCCCCGGA
TCCCATGGAAGGGTGACCGTGCCACACAGGAGGTGATGGGTGGGGATCTT
GAGATTGCTAGGCACTGATCCTCAGCCTCCCTCTCAGTGGGCCTTGAAGC
TCCATCATTACATGACGGTTCTCCGCAGCCAGTGGACCGTGTTGAAAATG
ATGGATGCTCCCCCTCTCCTTCAAGGCACTTGCCTTATGACCACATGTTG
AGAAGAACTTCCTTATCCCCTGGTGCTGTCCTTGTTGTGCTTTTATTCAC
AATGTTATGTTTAACGTGCCCAGACATTTGTGTAATCATTTTTCTAGAAT
ACCTCAGCCTATCACTATTATTGTTTTGCCTAATCCACGTTTTGCTATTT
TCCTCTACCCTCTCCTACTCCTATTTTATTTTTTTTTACAACTCCTATCC
CCCTTTGTTCTCCTTTTTATCGTTTACTTCTATACTCAATTGCCAAAATA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no126_h09.g1 MSMg01no126_h09.g1 CHROMAT_FILE:
MSMg01no126_h09.g1 PHD_FILE: MSMg01no126_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:51 2005
         (243 letters)



>mm_chr15_89097154_89097796
          Length = 643

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggtcttaggatccaaatttaaattctggaaagtgaagctttcttccgggctcaggct 60
           |||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 agtggtcttaggatccaagtttaaattctggaaagtgaagctttctttggggctcaggct 260

                                                                       
Query: 61  ggccctgggatctcagcaggttagatgtggtcacagccacttaaacaaagacagcctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccctgggatctcagcaggttagatgtggtcacagccacttaaacaaagacagcctgtg 320

                                                                       
Query: 121 agccacagatgagagaacagatgtggggagtcagcagcagcagagcttctttgccccgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccacagatgagagaacagatgtggggagtcagcagcagcagagcttctttgccccgga 380

                                                                       
Query: 181 tcccatggaagggtgaccgtgccacacaggaggtgatgggtggggatcttgagattgcta 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccatggaagggtgaccgtgccacacaggaggtgatgggtggggatcttgagattgcta 440

              
Query: 241 ggc 243
           |||
Sbjct: 441 ggc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)