BAC Information

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BAC

Clone NameMSMg01-128E20
Chromosome15 (Build37)
Map Location 24,563,351 - 24,563,612
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666989, LOC666999
Downstream geneLOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128E20.T7 (MSMg01no128_e20.b1)MSMg01-128E20.TJ (MSMg01no128_e20.g1)
ACCAG336612AG336613
length721691
length of high quality
(start - end)
293 (68 - 360)262 (369 - 630)
definitionCHROMAT_FILE: MSMg01no128_e20.b1 PHD_FILE: MSMg01no128_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:20 2005CHROMAT_FILE: MSMg01no128_e20.g1 PHD_FILE: MSMg01no128_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATGAAGTTCTTCGGCAAATGGATGGAACTAGAAAATATCATCCTGAG
TGAGGTAACTCAATCACTAAACACCCACATGGTATATACTCACTGATAAG
TGGACATTAGCCCAAAAGCTCCGAAAACCCAAGATTCACAGACCAAAGAG
AAGTTGAAAAAGAAGGAAGACAAAAGTGTGGATACTTTGGTCCTTCCTAG
AAGGGGTAACAAAATACCCATAGGAGTAGTTACATAGGCAAAGAGTGGAG
CAGACACTGAAGGAAAGGCCATCCAGGGACTGCCCCACCTGAGTATCCAT
ACCATATACAGTCTTTTTACCCACACACTACTGTAGATGCCAACAGGAGC
TTGCTGAGCAGGGCGCGCCGGCACACAGAATTTAATCCCAGCAATCGGGA
GTTCGAGGCCAGCCTGGTCTGAACAGCCAGAGAAACCCCGTCTTGAAAAA
CCAAAAAACATAAAAAAGAAAAGAAAGAAAACGCTTGCTGACAGGAGCCT
GATATAGCTGTCTCCTGGGAGGCTTTACCAAAAATAAAGAGGTGGTGGAT
GCTCTCAGCCACCATTGGATTGAGCACAAAGTTCCCAATGGAAGAGCTAG
AGAAAGGATCGAAGTACCTGAAGGAGCTTGCAGCCCCATAGGAGGTACAA
CAATATGAACTAACCAGATCA
NNTCTCGATGATGTGGGTAGGCTGGAGGCCGGCCTTTCGTACCAGTGAGG
TGAACTATAGAATGACAAAAAAAGATCACTTTCCAAAAGCGTATTTCTGC
TTCATTGGTGATACAGTTTTACCTTATTTTGCTTTCTATTCAAAAGCTGC
CTGGTAAACAAGAAATGTTTAAACACTAGTTTAAGTCAGAACACTGTTTC
TGGGTGAAAGAGAAATGCCTTAGCAATGAAGAATGCTTACAGATTTTTCC
CAGTATCAAGTTTTTATGAATTTGTATTGAGTTCACAAAGGAAGTTGGAA
AGATTAGATCCTACTAAATAATGNTTCTTCCTTACACGAACCCTTAACAT
CTCTACACATAGTTTGATTGAAAACCTGTCTCGATAAAATAATTTTGTAG
AATTTTTGTTATATATTTTAAGTATTAAATGTTTTATAACTCTTTCAAGG
AATGACAGTATTTAGTACTAGTCTATATTGTTGTTTCATTGTGTCTTATG
AGCAACAAGTGTTAAGGCAACTTCAGTGTCCAGTAAATACACTTCTTGAG
AGAGATGAATTAGCAAACAAAATGTCCTTGAGTTTAGTTGAAAGGTAGAG
TATGAGGATTTAGACATCAGAAAAGGCCATAGATAAATAGATGCATGCAG
TTTTTGAAGCACATTTGACAATCTGGATTCTTCTTTGGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_e20.g1 MSMg01no128_e20.g1 CHROMAT_FILE:
MSMg01no128_e20.g1 PHD_FILE: MSMg01no128_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:21 2005
         (262 letters)



>mm_chr15_24563080_24563741
          Length = 662

 Score =  507 bits (262), Expect = e-148
 Identities = 262/262 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaaacctgtctcgataaaataattttgtagaatttttgttatatattttaagtattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgaaaacctgtctcgataaaataattttgtagaatttttgttatatattttaagtattaa 474

                                                                       
Query: 61  atgttttataactctttcaaggaatgacagtatttagtactagtctatattgttgtttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 atgttttataactctttcaaggaatgacagtatttagtactagtctatattgttgtttca 414

                                                                       
Query: 121 ttgtgtcttatgagcaacaagtgttaaggcaacttcagtgtccagtaaatacacttcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ttgtgtcttatgagcaacaagtgttaaggcaacttcagtgtccagtaaatacacttcttg 354

                                                                       
Query: 181 agagagatgaattagcaaacaaaatgtccttgagtttagttgaaaggtagagtatgagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agagagatgaattagcaaacaaaatgtccttgagtttagttgaaaggtagagtatgagga 294

                                 
Query: 241 tttagacatcagaaaaggccat 262
           ||||||||||||||||||||||
Sbjct: 293 tttagacatcagaaaaggccat 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space:   165209
Effective search space used:   165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)