BAC Information

Click to search

BAC

Clone NameMSMg01-128H13
Chromosome15 (Build37)
Map Location 30,008,123 - 30,008,528
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382975
Downstream geneCtnnd2, 9630009A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128H13.T7 (MSMg01no128_h13.b1)MSMg01-128H13.TJ (MSMg01no128_h13.g1)
ACCAG336731AG336732
length783687
length of high quality
(start - end)
147 (73 - 219)524 (73 - 596)
definitionCHROMAT_FILE: MSMg01no128_h13.b1 PHD_FILE: MSMg01no128_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:34 2005CHROMAT_FILE: MSMg01no128_h13.g1 PHD_FILE: MSMg01no128_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCCTCTATAATTGCGGCGCTAAACGACTCCTATTCGCGAGAGGATCCGC
GGAATTCAAGACCTTTCTCGAATAGGTCGTGAGTTTCAGGCCAGTATCAA
AATATAAGATGAGCCATAGCATTCATATATACATATACGTATATATTCAT
ACATCATATATATATGTGTATATATGTGTATATATGTGTATATATGTATA
TATGCATATGTGTATATGAGTGTTATGGTGCATCTGATCTGTAGCTCCCA
GGCCCGTTGCCCACGTCCATTGCCCGCCTGTGCCTTTCCCCCCCCTCCTT
TCTTGTTCCCTTCTATATTTCCCCCTTTTTTTTTTTCACTGGCCCCCCAC
TGCGCGCTTAATCTTTTATTTTTTATTACCCCCCCCCCTCTCTATTCTTG
CCATGTTTCCTTTATTCCTGCATTTTTGTCTCCCCCCCAAAGCGCAATAA
TTATATTGTTTTGTTTTTTTTATCCACCCCTTTTCTCCGCCTCACTCATT
CTGATTTTAAACCTTCGCTTTTGTTACTTTTGTCTCCTCTTTAAAGACCG
CCCCCTTGACAGTTTATTACTCTCATATCTTTTCCCTCAGTTTTTCTTAA
TTTTTAATATGTATGTTTTCGCACCTTCTCTTCTTCCCCCCTTCTCTAGT
TTTTCCTTTTGACCCTTAATATTTTTACTATGTCATGACCCCCCCCCCAC
CTCCCCGCCTATTTTTCTCTTTTCTTTCTTTCCCTCCCTTTTTCTCCTCC
CCCTCTCTTCCCCTCTTCTTTTTCTTTTCCTTC
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGAATATACTCTGAGAGAAATGACATAAT
TACTTCTGTTGTTATCTGATTATGATTGGATTTATTTTTCCTGTACATGT
TTAAAGTTTATAATAAAGACAAACTGAAGATATAATCTAATTTATTTTAA
GCTGACCTCCTTGGAGATACTTTGTTTTCTATTGTTGTTCTAGTGCATTG
AAGCAATAGTAAGCCATGTGTGGTAGCTCATACCCATCATCCTCACCCTC
AGGAGGCTGAAGTATGAGGATCATGAGTTCAAGGCTAACCTTTGCTACAC
AGTGAATTCACAACCAATTTGGGCTGAATATATGAGATCCAAAAATCCAA
ATGGGACACAAACATAAAACTGGAAATATATTTAGAGCATTTAGAAGTCT
TTCTTTTTTAGTGTTCTCTTAAAAGCAATATTCAGGAGGTTTTATACAGC
CTCTTTGAAGCAGATGGATCATTTGGGACTGTTTTATGACCCTCCTGTGC
ACTGTTTAACTGAATCACGAATTTATGATATATGTAGTTAATTGAGACAA
GGAAGGAAAGACCACTAGGTCTTTCCCCTACCCATGTAAATAAATTTACA
CTAAGGTAAAAACATCATGAATGGCTCTACTGTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_h13.g1 MSMg01no128_h13.g1 CHROMAT_FILE:
MSMg01no128_h13.g1 PHD_FILE: MSMg01no128_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:34 2005
         (524 letters)



>mm_chr15_30007605_30008528
          Length = 924

 Score =  725 bits (375), Expect = 0.0
 Identities = 399/407 (98%), Gaps = 2/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 119 tttattttaagctgacctccttggagatactttgttttctattgttgttctagtgcattg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tttattttaagctgacctccttggagatactttgttttctattgttgttctagtgcattg 865

                                                                       
Query: 179 aagcaatagtaagccatgtgtggtagctcatacccatcatcctcaccctcaggaggctga 238
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 864 aagcaatagtaagccatgtgtggtagctcacacccatcatcctcaccctcaggaggctga 805

                                                                       
Query: 239 agtatg-aggatcatgagttcaaggctaacctttgctacacagtgaattcacaaccaatt 297
           || | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agca-gaaggatcatgagttcaaggctaacctttgctacacagtgaattcacaaccaatt 746

                                                                       
Query: 298 tgggctgaatatatgagatccaaaaatccaaatgggacacaaacataaaactggaaatat 357
           ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 745 tgggctgaatatatgagatccaaaaatccaaatgggataaaaacataaaactggaaatat 686

                                                                       
Query: 358 atttagagcatttagaagtctttcttttttagtgttctcttaaaagcaatattcaggagg 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atttagagcatttagaagtctttcttttttagtgttctcttaaaagcaatattcaggagg 626

                                                                       
Query: 418 ttttatacagcctctttgaagcagatggatcatttgggactgttttatgaccctcctgtg 477
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 ttttatacagcctctttgaagcagatggatcacttgggactgttttatgaccctcctgtg 566

                                                          
Query: 478 cactgtttaactgaatcacgaatttatgatatatgtagttaattgag 524
           |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 cactgtttaactgaatcaagaatttatgatatatgtagttaattgag 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)