BAC Information

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BAC

Clone NameMSMg01-128P03
Chromosome15 (Build37)
Map Location 67,188,067 - 67,188,353
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128P03.T7 (MSMg01no128_p03.b1)MSMg01-128P03.TJ (MSMg01no128_p03.g1)
ACCAG337086AG337087
length731718
length of high quality
(start - end)
140 (89 - 228)287 (67 - 353)
definitionCHROMAT_FILE: MSMg01no128_p03.b1 PHD_FILE: MSMg01no128_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:12 2005CHROMAT_FILE: MSMg01no128_p03.g1 PHD_FILE: MSMg01no128_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGATCTTTCCCGACTTTTATCATGAATGTGTGTTGGATTTTGTCAAAT
GCTTTCTCAGCATCTAACGACATGATCATGTGGTTTTTGTCTTTGAGTTT
GTTTATATACTGGATTATGTTGATGGATTTCCGTATAGTGAACCATCCCT
GCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGATG
TGTTCTTGGATTGGGTTAGCAAGAACTTTATCGAGGATTTTTGCCTCCAT
CTTCTCAATGCAAATTGCTATGAACTTCTCTATCTTTGTTGCTTCTTTCT
GCGGCTTATGTATCATACTAATTGTGGCTTCTTAGAACGTCTTTGCTCAC
AGCATTCTTCCGCCCTTATTTTGTGAATTATCTTGCGACCAACCGCTATT
ATATCTTCTTTTGATGCCTGATTGCAATTCTGCATTATTTCCATTTGGTC
CTGTTTTTTCTCTTTGTCGTGATTTTATTCCCTGACCTGTTTCTATTTTT
TTCGACCCATATTCCCCCTGTTTTATACATTTCCCTTGTATCTCGCCTCT
ACTTTTGTTACCTTGTATTTTTTTTATTACTTCCCTTTTTTTTTTCCCCC
ATCTCTCCCTCCCTCCCCCCCTTTTTCCTTCTCATATTCTTCCTTTTTGT
TCCCGCCTCCCCTTATTTTTTTTTTTTATTA
TGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGACTCCAGAGCAGGTGACTTGGATTTGTATGTT
TCTTCCTATTTCTAGCTCTTGGCTCATGAACCTCCTTCATTTAGAGTCTT
CATTGCAGCAGATATCTTGGAGGTGTTTAGGTGTCTGTCGGGGGCAGCAA
ATGGGTATTATCTATCCCCTTTGGAAGTTCCAGGGCTACCCAGAATTAAT
TCCAATAGCAAACCCTGCTTGCTCTTCCATGTTTCTTCCTTCTCCTCCTG
GGTTTTAGGAACCTAAGTTCAGAAGCTCACATTGGCCATGTATGGTTATA
GTGATATAAGTTCACCTGTGCCGAGACTCTGAGTCTATTGGTTGAAGGGA
AGGCCCGACGTAGGTAGGTTCTTGAGTAGACATCCATTAACCCTGGAAAT
TCGAGGCAGCATTTTAGTATTGTTTTATAAAATAGGGTAAAAAAGCTTAA
ATGACCATCCTTTCTCCAAGGATCTCCTAATTCTGAATTGCCTCCAGATG
CATAAAGTGATAATTTTATATCTCCGTGGCCTATTCCTGGCCAAATGAAG
TTACTATAACTGATCCTTAAACTTATTAACACCATTTCCCCACTTTACCT
GCCCTCGGAGAAACAAGGGAATGCCACAAAACAACGAATCTCGCGCCTAA
ATTTGTACTCCCTTGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_p03.g1 MSMg01no128_p03.g1 CHROMAT_FILE:
MSMg01no128_p03.g1 PHD_FILE: MSMg01no128_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:12 2005
         (287 letters)



>mm_chr15_67187867_67188553
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgactccagagcaggtgacttggatttgtatgtttcttcctatttctagctcttggctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgactccagagcaggtgacttggatttgtatgtttcttcctatttctagctcttggctca 260

                                                                       
Query: 61  tgaacctccttcatttagagtcttcattgcagcagatatcttggaggtgtttaggtgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacctccttcatttagagtcttcattgcagcagatatcttggaggtgtttaggtgtct 320

                                                                       
Query: 121 gtcgggggcagcaaatgggtattatctatcccctttggaagttccagggctacccagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gtcgggggcagcaaatgggtattatctatcccctttggaagttccagggatacccagaat 380

                                                                       
Query: 181 taattccaatagcaaaccctgcttgctcttccatgtttcttccttctcctcctgggtttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattccaatagcaaaccctgcttgctcttccatgtttcttccttctcctcctgggtttt 440

                                                          
Query: 241 aggaacctaagttcagaagctcacattggccatgtatggttatagtg 287
           ||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 aggaacccaagttcagaagctcacattggccatgtctggttatagtg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)