BAC Information

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BAC

Clone NameMSMg01-129I08
Chromosome15 (Build37)
Map Location 69,695,252 - 69,695,536
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129I08.T7 (MSMg01no129_i08.b1)MSMg01-129I08.TJ (MSMg01no129_i08.g1)
ACCAG337509AG337510
length704703
length of high quality
(start - end)
315 (49 - 363)38 (117 - 154)
definitionCHROMAT_FILE: MSMg01no129_i08.b1 PHD_FILE: MSMg01no129_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:57 2005CHROMAT_FILE: MSMg01no129_i08.g1 PHD_FILE: MSMg01no129_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTCTTAGACCTAGACCTTTAGGTACAGAATTAGCACTACAA
TACAACAGTACCCCCAGGGGCAGTTTTTTTTCTACCCAGCCTATATTTTG
CCTATATATAGCTTTGTCTTAGATGGCAACATATTGACTATTCTAGTAGA
TTCTAGATATCTACTAGGAAAAAACAACTTTTTTTTTTAAAGAAGGCAAC
TGGCCTTTCTATCCTGGCTGTGTATGCCCATCAACTTCTTGCAATATCCT
TCTGAATTCTCAAACAATCCATGTCCTTTCTAGCCTTTAATACTGCTATT
CACCATTTATCACTGATTCCACAAGGGCCACTGTAGATCGGGGTCGCCTT
TGTGGATAACTCAACAATTCAATTCCATTTCTGTAGTTCAAGAATTCTAC
TATGAAGTTCATTAAGTATACTCATTAATATTTCCTGTATCAGCATTTAG
GAATGCCAGATATCAGATATTACCCTTGCTGAGTAATTCTGGCAAGGACA
TTAGTAGCCAAATCTTTATTACCTCCTAGACAACGTATAATGACATTCTT
GTATCAGACCCTGTTTCAATGTCGTAGTCTGCATTATTTCTGTCCTTACT
TACTTGGAACAAGCTCTATGAAGCCTGGTTTTGACAACCGAAGCACATCC
GTTG
AATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCGCCTGTCTTGAAGTAGCTGGGGCC
AGTATTTGAGTCACAGTCTTTTTTTCTAGCCTCCGTCAACCACCGTTTCC
CATCCGGGAGGGTATATCCCAGGTAGACTACTTCCATCTGACATAGCTGG
CCCTTTTTAGCAAAGGCCTGGAAACCCAACTCACCCAGTTCTGCTAGCAA
TCTCTCGGCCCCCTGCCGGCACTCTCTCTCTCTGAGGTTGCAGCTAGGAG
CAAGCCATCAACATATTGAAGCAGTTATCGGGAAATTTTCAGCTCGAAAG
GAGGCTAATTTTCTATGCACACCCCCACCAAAAAGGGGGGGGAAATTCTT
GAACCCCGGGGGTAACTGTGCCAAAATAAATTGCCCCATTCGGCCGGGGG
GGGGATCTCTCCACTCAAAGGCAAATATGGGCTGACGGGAGGGATATAAC
TTCAAGCAAAAAAAAGCATCTTTTACATCATTTACGGGGTACCACTTTCG
CTCTGGGAAAAGTGACCTGAGAATGTTATAGGGATAAGAAACTTTGGGGT
GAATATCTGGAACCCTCTTATTGACCTCCCCCAGGCCTGGGACGGGTTGA
TATTCCTCTTGCCCAGTTTCTTTACGTGGCAAAAAGGATTATCCCGGGCC
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_i08.b1 MSMg01no129_i08.b1 CHROMAT_FILE:
MSMg01no129_i08.b1 PHD_FILE: MSMg01no129_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:57 2005
         (315 letters)



>mm_chr15_69695045_69695765
          Length = 721

 Score =  505 bits (261), Expect = e-147
 Identities = 277/285 (97%), Gaps = 6/285 (2%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcactcttagacctagacctttaggtacagaattagcactacaatacaacagtaccccc 67
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcactcttagacctagacctttagatacagaattagcactacaatacaacagtaccccc 267

                                                                       
Query: 68  aggggcagtttttttt-ctacccagcctatattttgcctatatatagctttgtcttagat 126
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aggggcagtttttttttctacccagcctatattttgcctatatatagctttgtcttagat 327

                                                                       
Query: 127 ggcaacatattgactattctagtagattctagatatctactaggaaaaaacaactttttt 186
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggcaacatattgacaattctagtagattctagatatctactaggaaaaaacaactttttt 387

                                                                       
Query: 187 tttt-----aaagaaggcaactggcctttctatcctggctgtgtatgcccatcaacttct 241
           ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttttttttaaagaaggcaactggcctttctatcctggctgtgtatgcccatcaacttct 447

                                                        
Query: 242 tgcaatatccttctgaattctcaaacaatccatgtcctttctagc 286
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tgcaatatccttctgaattctcaaacaatccatgtcctttctagc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 721
Length adjustment: 9
Effective length of query: 306
Effective length of database: 712
Effective search space:   217872
Effective search space used:   217872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)