BAC Information

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BAC

Clone NameMSMg01-129O07
Chromosome15 (Build37)
Map Location 9,968,146 - 9,968,491
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
Downstream genePrlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129O07.T7 (MSMg01no129_o07.b1)MSMg01-129O07.TJ (MSMg01no129_o07.g1)
ACCAG337785AG337786
length726731
length of high quality
(start - end)
545 (45 - 589)344 (77 - 420)
definitionCHROMAT_FILE: MSMg01no129_o07.b1 PHD_FILE: MSMg01no129_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:28 2005CHROMAT_FILE: MSMg01no129_o07.g1 PHD_FILE: MSMg01no129_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGATGCATACCGAATGGCTGAGAAGTACATGAAAAAAATGT
TCAACTTCCTTAATCTTCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGCA
GATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGATGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTCATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGATAACACATTCACAAAG
GAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCT
AGGATACCCAAGATATAAGATACAATTTCCCAAACACATGACACTCAAGA
AAAATGAAGACTGACGCGTGGACCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTGAATTTATTTTCTAGTGT
GTTCTTAAGATTAATTTGCTTGTCCTCTGTTACTGTAACAAACAGCTTGA
TAAAAAGTTGACATGAAGACAGTCCTATTTAGGTGATGCAGTGTTCAACT
TTTTCTTAAAAATTGTAGGTATATATTTAAGGGTTAAACAATACATAACA
TTTATTTTTACACACATTTTCAGTCACCTGATAGGCGACCAAAATCCACT
CTGAAAGAAAGGCAGCATCTTCAACAAATGGCTCAGAGAAATCTGTATTT
TCATATGCAAAAAATGTTATAGTTGCAATACAAAAACAGAAGAATATAAT
AAATAATATAATATAACATACCCCACGAGGTAATTTGTCCCTTAAAACAT
ACTAGGAAGGATACCATGTCTTTCCTGGTTAACATCTAGCCACAAGAAGA
ATAATGCTTGTGTTTTGTCATCAGGAACATCACCAATATATACAGAATAT
AAAATTTGAGTACATTACGTTTCTTGTTACTGAATAAAAATTCTTCTGAA
ATGTAATCTATAAAACTTCAGCTTACCACAATTTTTTTCAAAAGTGAATG
GTTCACTTTTATTACTACTTATATAGAAAGAGACAGATTGCTTCTGCCCC
AAATGGGCAATTTTTTTTTTGTTGTGTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_o07.g1 MSMg01no129_o07.g1 CHROMAT_FILE:
MSMg01no129_o07.g1 PHD_FILE: MSMg01no129_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:28 2005
         (344 letters)



>mm_chr15_9968108_9968853
          Length = 746

 Score =  634 bits (328), Expect = 0.0
 Identities = 341/346 (98%), Gaps = 2/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttgaatttattttctagtgtgttcttaagattaatttgcttgtcctctgttactgt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 tctgttgaatttattttctagtgtgttcttaagattaatttgcttgtcttctgttactgt 325

                                                                       
Query: 61  aacaaacagcttgataaaaagttgacatgaagacagtcctatttaggtgatgc--agtgt 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 324 aacaaacagcttgataaaaagttgacatgaagacagtcctatttaggtgatgcatagtgt 265

                                                                       
Query: 119 tcaactttttcttaaaaattgtaggtatatatttaagggttaaacaatacataacattta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaactttttcttaaaaattgtaggtatatatttaagggttaaacaatacataacattta 205

                                                                       
Query: 179 tttttacacacattttcagtcacctgataggcgaccaaaatccactctgaaagaaaggca 238
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tttttacacacattttcagttacctgataggcgaccaaaatccactctgaaagaaaggca 145

                                                                       
Query: 239 gcatcttcaacaaatggctcagagaaatctgtattttcatatgcaaaaaatgttatagtt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gcatcttcaacaaatggctcagagaaatctgtattttcatatgcaaaaaatgttatagtt 85

                                                         
Query: 299 gcaatacaaaaacagaagaatataataaataatataatataacata 344
           |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 84  gcaatagaaaaacagaagaatataataaataatataatataacata 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 746
Length adjustment: 9
Effective length of query: 335
Effective length of database: 737
Effective search space:   246895
Effective search space used:   246895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)