BAC Information

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BAC

Clone NameMSMg01-130C15
Chromosome15 (Build37)
Map Location 3,179,782 - 3,180,338
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674207, LOC666163, EG666167
Downstream geneSepp1, LOC100039139, Ghr, LOC223278, Fbxo4, AW549877, LOC100039196, Oxct1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130C15.T7 (MSMg01no130_c15.b1)MSMg01-130C15.TJ (MSMg01no130_c15.g1)
ACCAG337987AG337988
length714711
length of high quality
(start - end)
561 (45 - 605)237 (127 - 363)
definitionCHROMAT_FILE: MSMg01no130_c15.b1 PHD_FILE: MSMg01no130_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:50 2005CHROMAT_FILE: MSMg01no130_c15.g1 PHD_FILE: MSMg01no130_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAA
TTCTCTTCTCATTCCCCGCTGTCCTGTGGACGGTCTCCCCTACCCAGAGC
TGATGGAGCAGATACTATAAAGCACCACCATTTTTTTTCCTGCAATATAA
ATGTTTATTTCAGGCAAAACCCCGTCTAGTTGTAGTTTTTGTTAAAAATC
ACTTTAAAATAAACAATTTATAAAAAACAAACTGTTCTGCTTTGCATATT
TCTATCTTGTCCCTGGAACTAAAAATATGACCCAAGGCACAAATTTCAAG
TATTCAAGTGAATTTAAAACAAAATAAAAAGCAACAATAGTTCATCCAGT
AATTCACCTACATCTCAGCCTCACAGAAATCTTACTCAGTCTCTTGAAAA
ATGGGTAAAGGGTCCACACTAAAGAATGGGGCAGTTCAGAGAGAACTCTG
ACAGTACATCTATTCATGACTCACAAAGTCACCTGAACTTCAGTAAAAGA
TGGAAGCACATGATCAAAGCCCAAAGACATGACCTCTGTTCCCAAACCCT
GTGTCTCCTCACCACAAGAACAAGGCTCTTATTTGCCTAGGACCTTAAAG
AACTGGGGGGCGGGGGCGGTGGTTTTAACAAAGAACGTTTATGAATTCGG
TATTTAATCTTTTGTCCCCATTTCAAGCTTGTTTTTTGTTTGCCTTCCCC
CTTCTTTCCCCTCC
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACACTGATCATCTTGTGAAAACCCACACCAG
AGTCTCTGTTCAGAGGATTCAGCCTCCAGCTGTTGCTACCACATAAGGGT
TTTTATACAAGAAAAATAAATGAATTAAGTCTGCTAAGAAAAAAAAAAAA
AAGAATCAATGAGGGTTATCTTAACTGTGACTCACTACTTTGGGAATGTG
GAACCTGAAGTGGCCACTTGCTGTATCCAGATAGGAACCCCGGTGGAGCA
ATAGAGACCACAACCCACCCACGTTTTCTCTGTGCTTTCTTAGAGTTTTT
GGTCTCCTCTTCTTTTTTTACCCCACCCCACCCCCTATTCCCCGCCCCCT
CCATCTTTTTTGTGGCCGCCCCAAACCAAAAAAAGACTATAGCCACGAGG
TTTCAGCCCTCTCTTCTTGGATAGACTATAAAAATGGTGAGCTGGCTCTC
TGGCCACGCTGTGCCACATGACACTCAAGCTGCTAAGCAAGCTCTGATTT
TTCTACACCATGTAATTGGTAACAACTGAAACGTAAAAAGCCATCATTGG
ATGATAAGCATAGTTCTCCCTAGCGCCTGCATCGCGTATACTAAAGAACC
GGAATTTATGGTTGGCGAGAGTGATCACGCCTTTGAACGCCTCAAGTTAT
TTCACTGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_c15.b1 MSMg01no130_c15.b1 CHROMAT_FILE:
MSMg01no130_c15.b1 PHD_FILE: MSMg01no130_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:50 2005
         (561 letters)



>mm_chr15_3179579_3180538
          Length = 960

 Score =  984 bits (509), Expect = 0.0
 Identities = 547/561 (97%), Gaps = 7/561 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctcttctcat-tccccgctgtcctgtggacggtctcccctacccagagctgatgg 62
           |||||||||||||||  || |||||||||||||||||||| |||||||||||||||||||
Sbjct: 760 gaattctcttctcataaccacgctgtcctgtggacggtct-ccctacccagagctgatgg 702

                                                                       
Query: 63  agcagatactataaagcaccacca-ttttttttcctgcaatataaatgtttatttcaggc 121
           ||||||||||||||||||||||||  || |||||||  ||||||||||||||||||||||
Sbjct: 701 agcagatactataaagcaccaccagattgttttcctataatataaatgtttatttcaggc 642

                                                                       
Query: 122 aaaa-ccccgtctagttgtagtttttgttaaaaatcactttaaaataaacaatttataaa 180
           |||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaaacccccgtctagtt---gtttttgttaaaaatcactttaaaataaacaatttataaa 585

                                                                       
Query: 181 aaacaaactgttctgctttgcatatttctatcttgtccctggaactaaaaatatgaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aaacaaactgttctgctttgcatatttctatcttgtccctggaactaaaaatatgaccca 525

                                                                       
Query: 241 aggcacaaatttcaagtattcaagtgaatttaaaacaaaataaaaagcaacaatagttca 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 524 aggcacaaatttcaagtattcaagtgaatttaaaacaaaacaaaaagcaacaatagttca 465

                                                                       
Query: 301 tccagtaattcacctacatctcagcctcacagaaatcttactcagtctcttgaaaaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tccagtaattcacctacatctcagcctcacagaaatcttactcagtctcttgaaaaatgg 405

                                                                       
Query: 361 gtaaagggtccacactaaagaatggggcagttcagagagaactctgacagtacatctatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gtaaagggtccacactaaagaatggggcagttcagagagaactctgacagtacatctatt 345

                                                                       
Query: 421 catgactcacaaagtcacctgaacttcagtaaaagatggaagcacatgatcaaagcccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 catgactcacaaagtcacctgaacttcagtaaaagatggaagcacatgatcaaagcccaa 285

                                                                       
Query: 481 agacatgacctctgttcccaaaccctgtgtctcctcaccacaagaacaaggctcttattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agacatgacctctgttcccaaaccctgtgtctcctcaccacaagaacaaggctcttattt 225

                                
Query: 541 gcctaggaccttaaagaactg 561
           |||||||||||||||||||||
Sbjct: 224 gcctaggaccttaaagaactg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 960
Length adjustment: 10
Effective length of query: 551
Effective length of database: 950
Effective search space:   523450
Effective search space used:   523450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)