BAC Information

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BAC

Clone NameMSMg01-130I21
Chromosome15 (Build37)
Map Location 17,606,640 - 17,606,876
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh9
Downstream geneLOC100040162, LOC666835, LOC666839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130I21.T7 (MSMg01no130_i21.b1)MSMg01-130I21.TJ (MSMg01no130_i21.g1)
ACCAG338279AG338280
length699704
length of high quality
(start - end)
180 (381 - 560)236 (130 - 365)
definitionCHROMAT_FILE: MSMg01no130_i21.b1 PHD_FILE: MSMg01no130_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:24 2005CHROMAT_FILE: MSMg01no130_i21.g1 PHD_FILE: MSMg01no130_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCTATAATTGCGGCGCTAAACGACTCACTATAATTCGTAGCGGGCNG
GATTCTTTGATTCTTCCCAAGATCTGAGCCCCATTTTTAATGGGGGTATT
TGATTTTTCTGGAGTCCACCTTCTCGAATATATATATATGATATTAGTCC
CCTATCTGATTTAGAATAGGTAAAGATCTTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGATGATGTCTTTTGCCTTGCAGAAGCTTTGCAATTTT
ATGATGTCCCATTTGTTGATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTATTCAGGAATTTTTCCCTAGGTCCTTTATATTCCAGGCTTTTCCCTA
CTTTCTCCTCTATAATTTTACGCCTCTGGCTTTATGTAGCGTTCTTTGAT
CCACTTAGATTTGACCTCACCACAAGGAGATAGGATTGGATCTATTTGCA
TTCTTCTACATGATAACTGCCAGTTGTGCCAGCATCATTTGTTGAAAATG
CTGTCTTTTTTTCCACTGGATGATTTTTGTTCCCTTGTCGAAGATCAAGT
GACCATAGTTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTGATCACAATTGC
TCTGCAGTAAAGCTTTAGGTCAGGCATGCTGACTCCTCCAGAGATTCTA
CTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCCCCTTTTTGGCTTGGAAAAGCC
ATTATGAAAGTAGTTCTGGATTTTCTCTATTGGGTTTGCAAGAACAACGT
AGAAGTAGCTGACAGGACACAGGTAAAACAGTATTCTAATAAAGGGATCT
AAGGAGCCCTCTTGGATTTGGAAGAGTCAAGAGACAGATAGACTAGCTAG
ATAAAAAGACACAGATAAGAAGAGGTTTACATAGAGCGAGCAAGTTAGTA
GTAGGATGAGGTCTCTAAGTAAATATGTTTTACATAGTTAAGAAAATAAA
GTTACCTCACTGAGATTTATTTTTTCCTCCCCCCCCCTTACCTCAGTTTA
TGCCTATCACCTTTTTATTGGCACAAGAATAAAAAATAATAACTGGCTAT
TCGTATAAGGTTATATTTATATATTCAGCAAAACATATGTATGGTTCATT
TTTTCATGAATTTGAAAGAGAGCAAGAAACCTTATAAGAGGGACTTGGAA
GAAAGAAGGAATGCTTTAATTTTAATCCTAAAAATAAATTACAGATAATT
TTGTTCATATCCTTGTCAATCAAACGGTTTCTCCTTCAGCCAACTTATAT
AAACTCTTACAACCTATCTATAAATATTTGCTATTCAAAATATCCTCAAT
GTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_i21.g1 MSMg01no130_i21.g1 CHROMAT_FILE:
MSMg01no130_i21.g1 PHD_FILE: MSMg01no130_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:24 2005
         (236 letters)



>mm_chr15_17606440_17607076
          Length = 637

 Score =  404 bits (209), Expect = e-117
 Identities = 230/237 (97%), Gaps = 1/237 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggtttgcaagaacaacgtagaagtagctgacaggacacaggtaaaacagtattctaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 437 ttgggtttgcaagaacaacatagaagtagctgacaggacacaggtaaaacagtattctag 378

                                                                       
Query: 61  taaagggatctaaggagccctcttggatttggaagagtcaagagacagatagactagcta 120
           |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 377 taaagggatctaagtagccctcttggatttggaaaagtcaagatacagatagactagcta 318

                                                                       
Query: 121 gataaaaagacacagataagaagaggtttacatagagcgagcaagttagtagtaggatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gataaaaagacacagataagaagaggtttacatagagcgagcaagttagtagtaggatga 258

                                                                    
Query: 181 ggtctctaagtaaatatgtttt-acatagttaagaaaataaagttacctcactgaga 236
           ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 257 ggtctctaagtaaatatttttttacatagttaagaaaataaagttacctcactgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 637
Length adjustment: 9
Effective length of query: 227
Effective length of database: 628
Effective search space:   142556
Effective search space used:   142556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)