Query= MSMg01no130_j24.b1 MSMg01no130_j24.b1 CHROMAT_FILE:
MSMg01no130_j24.b1 PHD_FILE: MSMg01no130_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:30 2005
(298 letters)
>mm_chr15_24849988_24850685
Length = 698
Score = 569 bits (294), Expect = e-166
Identities = 297/298 (99%)
Strand = Plus / Minus
Query: 1 acctttagtactcaagttcagataacttacagaaagacatcataataacatatacacaat 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 410 acctttagtactcaagttcagataacttacagaaagacatcataatagcatatacacaat 351
Query: 61 cattttatttactttctttcataaatctgaatttaagtctaaactcaacgttcaaatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cattttatttactttctttcataaatctgaatttaagtctaaactcaacgttcaaatatt 291
Query: 121 tcatccacaatttttgatttttagttaaactcagtgatgttttcccttgaaagtgtaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tcatccacaatttttgatttttagttaaactcagtgatgttttcccttgaaagtgtaact 231
Query: 181 atcacacagctctcatcaattgcacagaccttttaaatactttatatattttattattga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 atcacacagctctcatcaattgcacagaccttttaaatactttatatattttattattga 171
Query: 241 ctggaaagttacctaaatcatgttgggaggtaatcaacaaaacacacttttacatttt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctggaaagttacctaaatcatgttgggaggtaatcaacaaaacacacttttacatttt 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_j24.g1 MSMg01no130_j24.g1 CHROMAT_FILE:
MSMg01no130_j24.g1 PHD_FILE: MSMg01no130_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:30 2005
(653 letters)
>mm_chr15_24753672_24754725
Length = 1054
Score = 948 bits (490), Expect = 0.0
Identities = 566/592 (95%), Gaps = 8/592 (1%)
Strand = Plus / Plus
Query: 67 gaaatgcaaattaaaacaaccctgagattccatctcacaccagtcagaatggctaagatc 126
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 266 gaaatgcaaatcaaaacaaccctcagattccacctcacaccagtcagaatggctaagatc 325
Query: 127 aaaaaatcaggtgacagcagatgctggcgaggatgtggagac-tttttatttttaacatt 185
||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 326 aaaaattcaggagacagcagatgctggcgaggatgtggagacttttttatttttaacatt 385
Query: 186 agtgaaatcaattgggtttttacccttacttaggaaattaaaaatgcagcaagttg-taa 244
| |||||||||||| |||||||||||||||||||||||| ||||||||||||| || |||
Sbjct: 386 aatgaaatcaattgcgtttttacccttacttaggaaatttaaaatgcagcaag-tgataa 444
Query: 245 tttataaatatataactatgatgaggttaatttaaaaaaaagagaaaggaa-agaaagct 303
|||||||| |||||||||||||||||||||||| |||||| ||||| ||| ||||||||
Sbjct: 445 tttataaagatataactatgatgaggttaattt-taaaaaacagaaa-gaatagaaagct 502
Query: 304 tgccaaaatagaaaactacaatactcttgcctctgtgaaac--tacaatagaatcaagtg 361
|| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 503 tgtcaaaatagaaaactacaatactcttgcctctgtgaaactgtacaatagaaccaagtg 562
Query: 362 caggacttagagaacattggtttcctcaatgcttgcactcatgcacaaaatctgagtact 421
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 563 caggacttagagaacattggtttcctcaatgcttgcactcatgcacaaattctgagtact 622
Query: 422 atgatgaagaagcctcctgctgcatttattcagaatttttggctttttagtggagtctat 481
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 623 ctgatgaagaagcctcctgctgcatttattcagaacttttggctttttagtggagtctat 682
Query: 482 ttaccaaaagatgaggagcagatgttgtatcttctcatgttagattaagaaggtgatatt 541
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttaccaaaggatgaggagcagatgttgtatcttctcatgttagattaagaaggtgatatt 742
Query: 542 ggcacaggtaagcaatttatcatcatgtccagatataataaattcatcaacacatccatc 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggcacaggtaagcaatttatcatcatgtccagatataataaattcatcaacacatccatt 802
Query: 602 cattaaaactttgtattacttaccatgcttcagttgaagttctgtatttcca 653
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cattaaaactttgtattacttaccatgcttcagttgaagttctgtatttcca 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
