BAC Information

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BAC

Clone NameMSMg01-130P18
Chromosome15 (Build37)
Map Location 61,085,793 - 61,244,059
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130P18.T7 (MSMg01no130_p18.b1)MSMg01-130P18.TJ (MSMg01no130_p18.g1)
ACCAG338601AG338602
length730736
length of high quality
(start - end)
330 (34 - 363)312 (378 - 689)
definitionCHROMAT_FILE: MSMg01no130_p18.b1 PHD_FILE: MSMg01no130_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:02 2005CHROMAT_FILE: MSMg01no130_p18.g1 PHD_FILE: MSMg01no130_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,243,738 - 61,244,059)(61,085,793 - 61,086,104)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCACCA
TCTTAACCCTTACCTTGGTCCTGCCCAGCTGAGTATTCAGGCTGAGCATT
AGAGGAGATGACCCCTTCTTTTCCCTCTAGTCTCCATTATTTTTTAGTAA
ACATCCATATCTATAGAGAAGTGAGTTTTCTGCATTTGTGTGTAATATCT
TCTCTACTCTTTCCATTTACCTTCTGTAGTTTGATGATAAAATTGGGGAA
TAGGATTGATGAGGCCTTCCAGTCTATTAAAGAGGCCCTGTGACTTCACC
TGCTTTACTGACTTATTAGCAGCCACACAGTTCAAGGAAATATAGACACT
GTTTTTTTTTCCCTTCACCCCATTGTTCTATGTTCATATGGAGCCACAAA
AGTGCACCGCGAGACAAAGATGCAATCTGCATTTCTTACTAGAGTCCCAC
ATTGAAAGATATTTTGGTGCCTTTAGGTATTTATAGAACGTTGACTTATT
TTCCACACAGACCATGCTCCCTGGAGCATGGCCCCTGTGTCAGAGAACTC
TAAAGGAGAACGTTGAGTAGGTAGGCCACCACAATACCACAGACACTTCC
CCAGGTGTGTGAACTGAAGAGGCTTCTGCACATAAGAGTTTTTGTTTCAA
ATCAGAATAATATTTTGCTTTCCATGGGATTAATGAGAAGGTTGTATTAA
CAAATGTGTAGGCCATGTACTTCTTGATAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCTTCTTGAGTTACTAATTATGTGGAGATTAC
ATTTATAAATGAAATACACCATGACTTGGATATTTTTAAAGGAATGTACA
CAAGTCCTCTATTGGGTCTTTGTGAAGAGATATTTCCATTTTCTTCATAA
AAGGAAGTGCATTTTCTATATGTCCTTATACACATAGGTTCTCTGCCTAT
GACAAAGGAAGAGTGAGAAAGGAAGTACGTGCTTGGTGAATATAAACAAG
AAAAATCCAATGGACTTCTATACCAATACCACTTAAACTCATAAGGAACT
TCCTGTATTTATTCACCCACCCCCTATAATATAGATTTCTCACCAGCAAT
GTAAGAACACACCAATACCAATCTTCACTGGGACTGAGGAAAAGGTAAAA
CACTTGTATATGAGGATAGAAAACACACAGAAATATAAACAAATGGTTCA
CAGAGAGAGATACATAAATGATCTAGTATCACAACAACTGTTTTATCTTC
AGAAATACAAATGACTAGACAGTCTGAAACTGTTGCTGAAGACACTACAA
ACTTAATCTCCCAGATAATTCAATGTTGTCCTGACCAGGAAGATTCCTTC
CCACTATTAGAGCCTACATGCTAACTTATTAACCTCTAGGCAAGATAAAA
GTACAGATGAAACACTGGTAAGACTATTTATGGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_p18.b1 MSMg01no130_p18.b1 CHROMAT_FILE:
MSMg01no130_p18.b1 PHD_FILE: MSMg01no130_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:02 2005
         (330 letters)



>mm_chr15_61243534_61244263
          Length = 730

 Score =  584 bits (302), Expect = e-171
 Identities = 317/322 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaccatcttaacccttaccttggtcctgcccagctgagtattcaggctgagc 64
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattcttcaccatcgtaaccctttccttggtcctgcccagctgagtattcaggctgagc 467

                                                                       
Query: 65  attagaggagatgaccccttcttttccctctagtctccattattttttagtaaacatcca 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attagaggagatgacccattcttttccctctagtctccattattttttagtaaacatcca 407

                                                                       
Query: 125 tatctatagagaagtgagttttctgcatttgtgtgtaatatcttctctactctttccatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tatctatagagaagtgagttttctgcatttgtgtgtaatatcttctctactctttccatt 347

                                                                       
Query: 185 taccttctgtagtttgatgataaaattggggaataggattgatgaggccttccagtctat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 taccttctgtagtttgatgataaaattggggaataggattgatgaggccttccagtctat 287

                                                                       
Query: 245 taaagaggccctgtgacttcacctgctttactgacttattagcagccacacagttcaagg 304
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 286 taaagaggccctgtgacttcacctgctttactgacttaatagcagcaacacagttcaagg 227

                                 
Query: 305 aaatatagacactgtttttttt 326
           ||||||||||||||||||||||
Sbjct: 226 aaatatagacactgtttttttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no130_p18.g1 MSMg01no130_p18.g1 CHROMAT_FILE:
MSMg01no130_p18.g1 PHD_FILE: MSMg01no130_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:03 2005
         (312 letters)



>mm_chr15_61085593_61086304
          Length = 712

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatatagatttctcaccagcaatgtaagaacacaccaataccaatcttcactgggactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatatagatttctcaccagcaatgtaagaacacaccaataccaatcttcactgggactga 260

                                                                       
Query: 61  ggaaaaggtaaaacacttgtatatgaggatagaaaacacacagaaatataaacaaatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaaggtaaaacacttgtatatgaggatagaaaacacacagaaatataaacaaatggt 320

                                                                       
Query: 121 tcacagagagagatacataaatgatctagtatcacaacaactgttttatcttcagaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacagagagagatacataaatgatctagtatcacaacaactgttttatcttcagaaata 380

                                                                       
Query: 181 caaatgactagacagtctgaaactgttgctgaagacactacaaacttaatctcccagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatgactagacagtctgaaactgttgctgaagacactacaaacttaatctcccagata 440

                                                                       
Query: 241 attcaatgttgtcctgaccaggaagattccttcccactattagagcctacatgctaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcaatgttgtcctgaccaggaagattccttcccactattagagcctacatgctaactt 500

                       
Query: 301 attaacctctag 312
           ||||||||||||
Sbjct: 501 attaacctctag 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)