BAC Information

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BAC

Clone NameMSMg01-131D12
Chromosome15 (Build37)
Map Location 88,718,188 - 88,718,692
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3
Downstream gene1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131D12.T7 (MSMg01no131_d12.b1)MSMg01-131D12.TJ (MSMg01no131_d12.g1)
ACCAG338778AG338779
length759725
length of high quality
(start - end)
36 (127 - 162)509 (72 - 580)
definitionCHROMAT_FILE: MSMg01no131_d12.b1 PHD_FILE: MSMg01no131_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:22 2005CHROMAT_FILE: MSMg01no131_d12.g1 PHD_FILE: MSMg01no131_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXACTACTTCAAGACAAGGCGCGGA
ATTCCTGATCTTTCCAAAAATATATCATGAATGGGAGTTGGATTTTGTCA
AATGCTTTCTCCTGATCTTACCCCATGATCATGTGGTTTTGTCTTTGAGT
GTGTTTATATAATGTATTACATTGATGGATTTTCGAATATTACACCATCC
CTGCATCCTTGGAATAAAACCTACTTGATCATGATGTATGATTGTTTTGA
TGTTGTCTTGGATTCTGTTAGCTAGAATTTTATTGAGTATTTTTGCTTAG
ATATTCATAAAGTAAACTGTTTTTTATTTCTCAAAACCTGCCGCACCATT
TTGTGCTTTATTTATTACACTACCCGCGGCTTCATAGAAAGAGCTGGGAA
CAGTACCTTCTACCTCCACTTTGAGAAAAAACTTGCGCAAAACCGGTATC
ACATCCTCTTATCACGGTCTGTCATAACCTCCGCTCTTCTTCCCACCTGG
ATTCTTGCATTTTTTTTTGTATGCAAAAACCATTAATGAAATGCACCTAT
ATTCTATAAAAATATATGTTATTCGTTTACATCATTTTACTATATCTTTT
TTTAAAACAATCACACCTGATAAAATGTATCAAAAATTCGTCTATATTCA
CTCTTGATTTTTATAATTATTTATATCTATATCCTTTCTATATAAAAGAA
CTGACGGCACCTTTGTAATATCTCCTACTACATGAATGCAAAGTACTCCA
TTATATTAA
CATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCCTGTGAACAGGAAACAACACAAAGGC
TGAGAGGATGTGGGTCTCTGAGAGGCCTCTGGACTCACCCTTGACCTAGC
CCCTCAGAGTGACAGACCTTCATCCTGCCCCTAGCTTCTCCACATATAGA
GGTACTAGCCCGAGGCCTATGACTCAGTGGTCATTTAGAAAACAGTGCAG
GCCGACCCCTGACGACTTCAGTGTCTTCCTCTCTTTGTGGCCTCCATGCC
TTGCTCCTCTCAGCAGTCTCTGCTCCCAGACGGCTTATCTACTCAGTGAA
AATCAATTGAATATTTGTTCTGTGCTACTAAGGAGTCAGGCCATATGATT
ACATACCTATAGAGACCAACCCTGCCTTTCCTCTTAAGAGCTCATCTTCC
AAAAGAGGCAGAGTAATTTGACAATCTAAGAACTCCGTGACTGTGTTTTT
GCGTGGGTCTCCTTGTATAACACCATGAGAAAACAACACTCCTGTTAGAG
TGTGAGGCTGCAAATTCACAGGGTGGTCTGTAGAGGCTTTGCAAGGAGGT
AAGCTGCACGAACCCTCGCTTTTAGGTCAGTCAACTCCTACACGGCTGGG
GAACATCCACAGAGGTGGGGAGGACACCTGGCTGACATCCTAGGGGATCT
TGTGCTGGACCCTGGCCTACAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_d12.g1 MSMg01no131_d12.g1 CHROMAT_FILE:
MSMg01no131_d12.g1 PHD_FILE: MSMg01no131_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:22 2005
         (509 letters)



>mm_chr15_88717988_88718896
          Length = 909

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgtgaacaggaaacaacacaaaggctgagaggatgtgggtctctgagaggcctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctgtgaacaggaaacaacacaaaggctgagaggatgtgggtctctgagaggcctctg 260

                                                                       
Query: 61  gactcacccttgacctagcccctcagagtgacagaccttcatcctgcccctagcttctcc 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gacttacccttgacctagcccctcagagtgacagaccttcatcctgcccctagcttctcg 320

                                                                       
Query: 121 acatatagaggtactagcccgaggcctatgactcagtggtcatttagaaaacagtgcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatatagaggtactagcccgaggcctatgactcagtggtcatttagaaaacagtgcagg 380

                                                                       
Query: 181 ccgacccctgacgacttcagtgtcttcctctctttgtggcctccatgccttgctcctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgacccctgacgacttcagtgtcttcctctctttgtggcctccatgccttgctcctctc 440

                                                                       
Query: 241 agcagtctctgctcccagacggcttatctactcagtgaaaatcaattgaatatttgttct 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagtcacagctcccagacggcttatctactcagtgaaaatcaattgaatatttgttct 500

                                                                       
Query: 301 gtgctactaaggagtcaggccatatgattacatacctatagagaccaaccctgcctttcc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gtgctactaaggagtcaggccatatgactacatacctatagagaccaaccctgcctttcc 560

                                                                       
Query: 361 tcttaagagctcatcttccaaaagaggcagagtaatttgacaatctaagaactccgtgac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttaagagctcatcttccaaaagaggcagagtaatttgacaatctaagaactccgtgac 620

                                                                       
Query: 421 tgtgtttttgcgtgggtctccttgtataacaccatgagaaaacaacactcctgttagagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtttttgcgtgggtctccttgtataacaccatgagaaaacaacactcctgttagagt 680

                                    
Query: 481 gtgaggctgcaaattcacagggtgg 505
           |||||||||||||||||||||||||
Sbjct: 681 gtgaggctgcaaattcacagggtgg 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)