Query= MSMg01no131_f24.b1 MSMg01no131_f24.b1 CHROMAT_FILE:
MSMg01no131_f24.b1 PHD_FILE: MSMg01no131_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:34 2005
(562 letters)
>mm_chr15_73099045_73100002
Length = 958
Score = 994 bits (514), Expect = 0.0
Identities = 551/570 (96%), Gaps = 12/570 (2%)
Strand = Plus / Plus
Query: 1 acaggcttcttgaaggaacttctctctcacgctgtccgaagtacagtctttacatgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 193 acaggcttcttgaaggaacttctctctcacgctgtccgaagtacagtttttacatgtttt 252
Query: 61 gattgcaacagccaaagctggattctcctgtgtcagggaaattacagaatcactcataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gattgcaacagccaaagctggattctcctgtgtcagggaaattacagaatcactcataca 312
Query: 121 tgcaaaaaggttctccatattagtcaacacacacacacacacacacaca--------gaa 172
||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 313 tgcaaaaaggttctccatattagtcaacacacacacacacacacacacacacacacagag 372
Query: 173 ttttgtaactgtggacttgtggtcagacagaactggaactataaaatcagagttaagaat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttttgtaactgtggacttgtggtcagacagaactggaactataaaatcagagttaagaat 432
Query: 233 attctgtatgaaattctttagtaaaatggatacacatgtgaaatgccacaggcaagtcac 292
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 attctgtatgaaattccagagtaaaatggatacacatgtgaaatgccacaggcaagtcac 492
Query: 293 ttatgcatgtaccagatgctgagtatgtgcaatattaccggtaggtgctatcctgggttc 352
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 493 ttatgcatgtaccagatgctgagtatatgcaatat----ggtaggtgctatcctgggttc 548
Query: 353 ttggggcacacaagtgaacaaactgcttttaaaggttggctggcattccagtgcaaaaca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttggggcacacaagtgaacaaactgcttttaaaggttggctggcattccagtgcaaaaca 608
Query: 413 ccaatgataaagtcagttatttcacaatatattagaacagcattttagaagacaggagta 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ccaatgataaagtcagttatttcacaatatattagaacagcattttagaagacaggagta 668
Query: 473 gatcaggcagaacatgggagaccaaggggtgtcagctacatgaggaacacttcactgagc 532
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 669 gatcaggcagaacatgggagaccaaggggtgtcagctacacgaggaacacttcactgagc 728
Query: 533 agatgagaggaagacaaagcttccaagaag 562
||||||||||||||||||||||||||||||
Sbjct: 729 agatgagaggaagacaaagcttccaagaag 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 958
Length adjustment: 10
Effective length of query: 552
Effective length of database: 948
Effective search space: 523296
Effective search space used: 523296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_f24.g1 MSMg01no131_f24.g1 CHROMAT_FILE:
MSMg01no131_f24.g1 PHD_FILE: MSMg01no131_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:34 2005
(611 letters)
>mm_chr15_73249569_73250579
Length = 1011
Score = 1143 bits (591), Expect = 0.0
Identities = 606/615 (98%), Gaps = 8/615 (1%)
Strand = Plus / Minus
Query: 1 tgtatgattcagcgttcagtttaagtggagtttagtgggtgctgttgtatctactctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 811 tgtatgattcagcgttcagtttaagtggagtttagtgggtgctgttgtatctaatctgca 752
Query: 61 atcttggaactgggaaatagaatttgtgtgtgctgctggagctggaagacagcattacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 atcttggaactgggaaatagaatttgtgtgtgctgctggagctggaagacagcattacta 692
Query: 121 gtgttgaccagagtttacggacatgaagatgtttccttatcagccttaaaattaattaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gtgttgaccagagtttacggacatgaagatgtttccttatcagccttaaaattaattaaa 632
Query: 181 gtagttctatgtggaacttgctgatgaatacttccccttgctggaaagaaaatgactgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtagttctatgtggaacttgctgatgaatacttccccttgctggaaagaaaatgactgga 572
Query: 241 atcatcttataata----ttttagtgatcttaccactgggcccctgtgagtgtcactgcc 296
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 571 atcatcttataatagggg----agtgatcttaccactgggcccctgtgagtgtcactgcc 516
Query: 297 ttctggggaaacctgggagagtttctcctccttcccagccttggatggggattttgcttc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttctggggaaacctgggagagtttctcctccttcccagccttggatggggattttgcttc 456
Query: 357 aatgttattcctatgagaactgttggcctgcaggtgctgtagcacccctagtgtacacag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatgttattcctatgagaactgttggcctgcaggtgctgtagcacccctagtgtacacag 396
Query: 417 aagacctgcatgttgaagttcagagtaacttgtgggggtcacctggctcatattggtagc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aagacctgcatgttgaagttcagagtaacttgtgggggtcacctggctcatattggtagc 336
Query: 477 tctggaggggaaatggccacccagggcctgcaggactggacaaagcttaactggttttca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tctggaggggaaatggccacccagggcctgcaggactggacaaagcttaactggttttca 276
Query: 537 gaatgtgagtgatggtacctgggaagtttagataagtagattctgtcttggcactttcag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaatgtgagtgatggtacctgggaagtttagataagtagattctgtcttggcactttcag 216
Query: 597 aaccagagcttctga 611
|||||||||||||||
Sbjct: 215 aaccagagcttctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
