BAC Information

Click to search

BAC

Clone NameMSMg01-131J13
Chromosome15 (Build37)
Map Location 14,371,278 - 14,371,567
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC239338, LOC666708
Downstream geneLOC674819, LOC100040024, LOC100040033, LOC100040046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131J13.T7 (MSMg01no131_j13.b1)MSMg01-131J13.TJ (MSMg01no131_j13.g1)
ACCAG339056AG339057
length734731
length of high quality
(start - end)
240 (131 - 370)295 (78 - 372)
definitionCHROMAT_FILE: MSMg01no131_j13.b1 PHD_FILE: MSMg01no131_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:52 2005CHROMAT_FILE: MSMg01no131_j13.g1 PHD_FILE: MSMg01no131_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTTGCTACCGTATTGCGGTTGTGTTGTGGTAAATGTCCAAC
CCAAATGAACCCTGGCAAAGACAGCCCAACTCAATTGATATGAATACAAG
CTGCATGCCTAGGTTGGGCAGATCTACCACTACACTACCATCTTCCCCAC
CTACAAGATGCCTTACAACTTGTGGTTTCTCCAGGCCATGTGCTTTTCTT
CCACTTTCCTTCCACCTTCTCTTCTGTGATCCTCTCTTCTTTTCATCCTC
CTTCTCCCCCACACTTTCCACTCCTCCTTCCCTTCTGCCCAGTCACCTGC
TCTAACCTTTATTTTTTTTATTACCCCGCCCACAAGGTTCTTTGGAATTC
AGCTGAGTATTGACTCATTCCTTATTTGCAGCCCCTCCCAGAAAAGCAGA
ATTAGCATCAAAATACAAGCAGCTTCAGGGCTACCTACAATGGGGTTATT
TTTGTTTGTTCTGATTGTTTCATTTTATTGGTACATATGAATCACCCAAC
TGATATGCTTATGTTATATATATATACATACATATGACATTTTATAAATG
TTTATAATGAATTATTTGCTCATAGATAGCTCCCTTCCTCTTTCTAGGTT
TTATGATTCTCAGAATCTCCATGGTACTTACAGGATAATGGGTGTGGAAT
ATAGTAGCAGCACTAAAATACTTCTGGGTTACAC
NCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGCAGGAAGAAAGCATGAAT
GATTAATTAGGTTCTGTTCTTACCTCTGATTTATAGTAAAGAACAAAGTC
GGTATTTTCAGACTCACTTTCTATCTCTGTCAGGTCAGTACTGAACAAGG
AGAAATAACTCAGAAGCCAGCCCATGACACGTTGTCCTGCATGGCTAGTT
CTTCTACTAAATACAGCAGCTCATGACCAGCTTAACAACATTCAACAAAT
TTCAGTGACAGAAGAGATGTTGTAAGGACTTAAAATAATCTGTATTTTAA
AATCACAATATTTATTTCATAAATATTTTCACACTATATTGTTTGTTTCA
ACATTATTATTGTCATGGGTCCATTTGAAAATAATTAAACATTTTCATAT
TCATTTTAGATAATAATCTTGCTATTTTATTTTATTTTATTTTCGGGGTG
GTGTTTCAAGACATATATATAGCCATGGCTGTCCTGGAACTCATTCTGTA
GACCAGGCTGGCCTCCAACTCATAAATCGGCCTGCCTCTGTCTCCCAAGT
GCTGGGAATACAGATGTGCTGCCCAGCCAGTTTTGTTCTTTTAATCTTCA
ATTCAGCTATATAAATAAACTTTTAGCATCTATGGTGTTTCATTGAATGG
ATATATTTTACCTACAAGGGCTTTAGAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_j13.g1 MSMg01no131_j13.g1 CHROMAT_FILE:
MSMg01no131_j13.g1 PHD_FILE: MSMg01no131_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:52 2005
         (295 letters)



>mm_chr15_14371078_14371767
          Length = 690

 Score =  532 bits (275), Expect = e-155
 Identities = 288/295 (97%), Gaps = 5/295 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagcaggaagaaagcatgaatgattaattaggttctgttcttacctctgatttatagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 490 ctcagcaggaagaaagcatgaatgattaattaggttctgttcttacctgtgatttatagt 431

                                                                       
Query: 61  aaagaacaaagtcggtattttcagactcactttctatctctgtcaggtcagtactgaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaagaacaaagtcggtattttcagactcactttctatctctgtcaggtcagtactgaaca 371

                                                                       
Query: 121 aggagaaataactcagaagccagcccatgacacgttgtcctgcatggctagttcttctac 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 370 aggagaaataactcagaagccagcccatgacacgttttcctgcatggctagttcttctac 311

                                                                       
Query: 181 taaatacagcagctcatgaccagcttaacaacattcaacaaatttcagtgacagaagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 taaatacagcagctcatgaccagcttaacaacattcaacaaatttcagtgacagaagaga 251

                                                                  
Query: 241 tgttgtaaggacttaaaataatctgtattttaaaatcacaatatttatttcataa 295
           ||||||||||||     ||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgttgtaaggac-----ataatctgtattttaaaatcacaatatttatttcataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 690
Length adjustment: 9
Effective length of query: 286
Effective length of database: 681
Effective search space:   194766
Effective search space used:   194766
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)