BAC Information

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BAC

Clone NameMSMg01-131L05
Chromosome15 (Build37)
Map Location 22,244,132 - 22,244,359
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131L05.T7 (MSMg01no131_l05.b1)MSMg01-131L05.TJ (MSMg01no131_l05.g1)
ACCAG339133AG339134
length740726
length of high quality
(start - end)		228 (133 - 360)125 (132 - 256)
definitionCHROMAT_FILE: MSMg01no131_l05.b1 PHD_FILE: MSMg01no131_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:01 2005CHROMAT_FILE: MSMg01no131_l05.g1 PHD_FILE: MSMg01no131_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATGC
GCGGAATTCTCTACATTTTCCTCTGAATATACATGCAAAAATAACCATTA
AAGTTGAAATTCTGAATTTGATTTTTGTCTCGCAGGACACTTTGGATCAG
AGACAGCTTCTAGCAGGAATAGTGTTGATGTTGGGAACATGTACAACAAT
TACAAATAATTATTAAACAAAAATTAAGAGTCTTACAAAGCGTCCCATGT
ATACCATTTTGTTTTCATAACTATTAAATTGAATGTAAAATTTATTAATA
TGCTGAAAAATATTAAAATAACACTGTATCTAAATTGTATATTACACTAA
TCTATGTCTTAACTGTATCATTATTTAACCTGCTCACCTCTCACCATTCG
TGCCTCAATCAATTTATTTAGTAAATCCAGAAATGTATGAACAAAGCTGT
TAAGAGAATTATGTGAGATTCACTGAAAAGAGAATGACTTCCAGTGAAGA
TATGTGATGATGACTCCTGTGTCTTCCTTATACTGGTCTACTTCCACTAC
CATCATAACTATTGAAATACTTTCGCCTCTAGTTAATGAAATGTCTGACC
AATTAAAGAATTTCCTTCTCCTAAATGACTTCATATTCACCCCATTCCTG
TTGATATAAACATTCTACTCCGGGCATTTTCGCGAAGATTAAACTTGTCT
TAACCTTGCGGTAATGTATTTCGATTCCCCTACTGTTCGG

CTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTTCGAGAAAATCTTTTCCCAACCTCATCTGGAC
TCAATTGTAGAGGATATGCCTATTCCTCCTGATACTTGATGCCCCAGGGT
GCTGGGATACCCAGGGAAGGTCCATCCTCTCAGAGGAGAAGGGGGGGGTG
GCGATATAGTGAGGGAACTCTGTGAAGGTGAGTTTTGGAGGTGAGGCAGG
AATCTGGATGTATAATGAATAAATAAGTAAATGATTGGTGGAAAAACATA
AGAAATTCATGGAATGAGGACTAGGTATTTTTTTAGAGCAGACGTTATGG
TGGAATGGAGCTTTCTAGTTTGTTTTCAAGCTCATGTTTATTTAGCTGTC
TTACACATCTCATGTCTACCTTACTAGGGATTCATAGTGAACTGGGCTTG
TTCCTAGTAAATCATAAGTGAAGACTATTTTCTTACACTCACGTCCCAAA
CCTGTTTTTCTAGGCAAATTTGTCCCTCTGATTTTCTTTATAAATTCTGC
CTTGCTATTTATTTTACTTCTGAATTCTCCTTTAGATTGATCTAAGGCTG
CAATTGTAAGATCGTTTAGTAATTGTTTTGGGATTCGCTCCCCCAATTTA
TTTCTTCCGATTGCCGTATTATATAACTCTTGACTTTTGACAATCCCTTT
CCGGAAAACCTCTGTTTTTTTTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_l05.b1 MSMg01no131_l05.b1 CHROMAT_FILE:
MSMg01no131_l05.b1 PHD_FILE: MSMg01no131_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:01 2005
         (228 letters)



>mm_chr15_22243932_22244559
          Length = 628

 Score =  402 bits (208), Expect = e-117
 Identities = 223/228 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacactttggatcagagacagcttctagcaggaatagtgttgatgttgggaacatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacactttggatcagagacagcttctagcaggaatagtgttgatgttgggaacatgt 260

                                                                       
Query: 61  acaacaattacaaataattattaaacaaaaattaagagtcttacaaagcgtcccatgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaacaattacaaataattattaaacaaaaattaagagtcttacaaagcgtcccatgtat 320

                                                                       
Query: 121 accattttgttttcataactattaaattgaatgtaaaatttattaatatgctgaaaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 accattttgttttcataactattaaattgaatgtaaaatttattaatatactgaaaaata 380

                                                           
Query: 181 ttaaaataacactgtatctaaattgtatattacactaatctatgtctt 228
           |||||||||||||| ||| ||||||||||||||||| | |||||||||
Sbjct: 381 ttaaaataacactggatcaaaattgtatattacactgagctatgtctt 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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