BAC Information

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BAC

Clone NameMSMg01-131M05
Chromosome15 (Build37)
Map Location 6,799,134 - 6,799,366
singlet/doubletsinglet
Overlap geneOsmr
Upstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9, LOC100039396, LOC100039412, Fyb, LOC100039453, EG665511, 4921505C17Rik
Downstream geneLifr, Egflam, Gdnf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131M05.T7 (MSMg01no131_m05.b1)MSMg01-131M05.TJ (MSMg01no131_m05.g1)
ACCAG339180AG339181
length719720
length of high quality
(start - end)
652 (68 - 719)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no131_m05.b1 PHD_FILE: MSMg01no131_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:06 2005CHROMAT_FILE: MSMg01no131_m05.g1 PHD_FILE: MSMg01no131_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGC
GGAATTCTAGGATTTCCTTAATTTCTTCCTTTAGTTCTGCCATGACCTAG
CCATCATTTATTAGAGAGTTGTTCAGGTTACATGAGTTTGTACCCTTTTT
GTTATTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGCATAGGGTATGTG
TGTGTATGTTTCCCTTCTTTTGATTTTGCTGGTGTGAGATTATTTCCTGT
GTTTTCATAGATGTAGTTAACTTCCGTGAATTGAAGTTTTCCTTCTCATA
TCTTCTGTAGGGCTGGATTTGTAGATAGATATTGTTTAAATTTGACTTTA
TTATGTAATATCTTATTTTCTCCATCTATGGTGATTGAAAGTTTTGCTGG
GTATAATAGTCTGTGGTCTCTTAAGAGTCTGCAAGGCATTGGTCCAGGCC
CTTCTTGCCTTTAGAGTTTCTGTTGAGAAATCAGATATAATTCTAGTAGA
TCTCCCTTTATATGTTATTTGGTCTTTTTCTCCTGCAGCTTTTAAAATTC
ATTTGTTGTTGTTGTTGTTATGTGGAGTGGGGACTTAATATATTTGGTGT
TCTGTAAGACTCTTGTACCTTTATAAGCATCTCCCTCTTTAGGTTAGGAA
CATTTTTATCTAGAATTTTGTTGAAAATATTTTCTTGACCTTTGTCTGGG
ACTCTTCTCCTTCTTTTAA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCAGCAGTGGGATGAGAACACTGTG
GCCCACCCAGGTATTTGCACCTGAGTGCCTCCTTTCTACTCTCTATAAAA
CAGAATATTTAAAGCTGTTACTATTTTATATCAGCTTATTATTTTACTCT
GTTCTTAGATCACAAAGCATATTCCTGTCGGCCTGGTTTTGAGATCCTGA
TTCATGAAACTTTCCTTACTTAAGGAACAGCCTTTAGATATTACATGTGA
ATATTCTTAAAGCTAAAGTGAATACTAGACAACAACAACGACAAAAAAGA
AAACATCTTGTTGTTCTTATCCCCATTGCACTTGGTCTGAACACAATCTG
AGTGTTCTACCCATGAGCTTGAAAGGTCTTGCCCTGCCCCTGGCTGCCCC
ACCTGTCTCCACATGCTCTGAGCCCACACACTGCATCCTGCCTTCCAGCC
TGGCAGCTCCTCTACACCCTTCTCTCAAGGTCTCTGATGGCTCCCATTGG
GTTTTCCCAGAGATCTTGTTCCCAACTTTCACATTAAATTAACTTTGATT
TCTCTTTCATATCTTGTCTCAACGAATCTTTCATCTATATCGTGGAGAAA
AAATTAGGCCTAACTCCAGCATTCACAAGTCACCCTTTACCCCCCATATG
AATTCAGAACACCCCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_m05.g1 MSMg01no131_m05.g1 CHROMAT_FILE:
MSMg01no131_m05.g1 PHD_FILE: MSMg01no131_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:06 2005
         (234 letters)



>mm_chr15_6798934_6799566
          Length = 633

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%), Gaps = 1/234 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctcctttctactctctataaaacagaatatttaaagctgttactattttatatcagc 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tgcctcctttctactctctataaaacagaatatttaaa-ctgttactattttatatcagc 259

                                                                       
Query: 61  ttattattttactctgttcttagatcacaaagcatattcctgtcggcctggttttgagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttattattttactctgttcttagatcacaaagcatattcctgtcggcctggttttgagat 319

                                                                       
Query: 121 cctgattcatgaaactttccttacttaaggaacagcctttagatattacatgtgaatatt 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 cctgattcatgaaactttccttacttaaggaatagcctttagatattacatgtgaatatt 379

                                                                 
Query: 181 cttaaagctaaagtgaatactagacaacaacaacgacaaaaaagaaaacatctt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttaaagctaaagtgaatactagacaacaacaacgacaaaaaagaaaacatctt 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space:   140400
Effective search space used:   140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)