BAC Information

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BAC

Clone NameMSMg01-131N05
Chromosome15 (Build37)
Map Location 5,429,706 - 5,429,897
singlet/doubletsinglet
Overlap genenone
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4, LOC100039322, LOC100039308, LOC666291
Downstream geneLOC666319, LOC100039358, LOC666323, Dab2, C9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131N05.T7 (MSMg01no131_n05.b1)MSMg01-131N05.TJ (MSMg01no131_n05.g1)
ACCAG339227AG339228
length740765
length of high quality
(start - end)
193 (133 - 325)192 (73 - 264)
definitionCHROMAT_FILE: MSMg01no131_n05.b1 PHD_FILE: MSMg01no131_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:10 2005CHROMAT_FILE: MSMg01no131_n05.g1 PHD_FILE: MSMg01no131_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGC
GGAATTCCTTATATTTTCCTAATAGAGGAATATGGATGAATATGGAATAT
GAATGAATACATATTGGATGTTTTCCCCGCAAAAAATCTTTTTCCAATTC
TGCAGGCTGCTGCTTTGTCTGAATAACTGGGTCCTTTGTCTTGTAGAAGC
TTTTCAGTTTTGTGAGGTGCCATATATTAACTGTGATCTTAGCACCTCCA
CTACTGCTGTTCTGTTCAGAAAGGCTTCTCCTTTGTGTACGAGTTCGAGG
CTATTCTCCAGTTTCTCTTCTATCATTTTCAGTGAGACTGGTTTTATGGC
GAGGCCTTTGCTCCCTTTGTAGTTCACCTCCGGCCAGGGCGATAATTATA
TTTACATTCTTCTGCTAGCAGACTCCCAGTCTGACCATCATTATTTGTTG
AAGATGCTGTCTTTTTTACAATGTGTATTTATGGGTTCTTTATTACAACA
TAGGTGTCCACAAGCTTGTGGATTTATTTCTGGGTCCTCACATTGAGACC
TTTCATAAATATGCCTGTTTTTTTGACAAATGCATGTGACTTTTATTACT
ATATCTTTAATATGAAAATAAACTATTTTTATGGAAGAACGGCCCGCATT
TATAATTTATGCATTATTTGCACATATTATTATTGTCTACTATACTACTA
AAGCTATCCAAAATCCCTAATAACTTAAGTTAATCGGATA
ACGATGCAGTGGGAGCCTGGCGGCGCCTGGTTCTAAAAAGAGGTGAACTA
TAGAAGGTTCCGAAAAAAACCACTCACTATTTTGCTTGCTTTCTCTGCCT
CACATTCTTTTCTTTTTCCTCCCTCTGATTCTGCTTTAATGCTTTCTTTT
TTTGGATTAACTGCATCGTTCATGTGTGCTTTAGCCATCAGTCTTTTCAT
TGTTTTGGGATGAATCAGTGACTGAAGCTCATTTCTATGGAGTTGGTATT
CTCAGATAGGACGACGATTGGATATTTAGCATCAGGCATGGGCAAGCATA
AAAATGCGTGTATGTGTCTTGAGGGAATGGGTGGAGACAAAGAAGGATGA
GGAAGATGATTACGATGACAACGACGGATGAAGGAGATCGATTAATCATG
ATGGGTGTATGCATTTGGTACATAAAAAAAATTATATATAGCAGCACAGA
GATATAAGACCTTTAATTATATATTTGTGTCTAACTTCTACACACACCTT
TCACCCAACATCTCCCAATTTCCCCAAATGCTTTTAATTCTTTTATATAT
TTTACCTCTTGCTGTGTTCCACTTAAAACTATACTCTAATTTATCTTCTG
CATACTTCCAATATCCTTTACTCATTCTTCATTTTCTTCCCCCATTATTG
CTCTCTCTTCTTTGCAAAACAAATTTTAGCTTTATATTTATACTCAGTAT
CTTCAATACACTTTACTTATTTTCGCACATAACCATACTTTCCTGCACAT
TTTATTATCTCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_n05.g1 MSMg01no131_n05.g1 CHROMAT_FILE:
MSMg01no131_n05.g1 PHD_FILE: MSMg01no131_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:10 2005
         (192 letters)



>mm_chr15_5429506_5430097
          Length = 592

 Score =  319 bits (165), Expect = 6e-92
 Identities = 186/193 (96%), Gaps = 2/193 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcactattttgcttgctttctctgcctcacattcttttct-ttttcctccctctgattc 59
           |||||||||||||||| |||||||||||||||||||||||| ||||  ||| ||||||||
Sbjct: 201 ctcactattttgcttgttttctctgcctcacattcttttctcttttattcc-tctgattc 259

                                                                       
Query: 60  tgctttaatgctttctttttttggattaactgcatcgttcatgtgtgctttagccatcag 119
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 260 tgctttaatgctttctttttttggattaactgcagcgttcatgtgtgctttagccatcag 319

                                                                       
Query: 120 tcttttcattgttttgggatgaatcagtgactgaagctcatttctatggagttggtattc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcttttcattgttttgggatgaatcagtgactgaagctcatttctatggagttggtattc 379

                        
Query: 180 tcagataggacga 192
           | |||||||||||
Sbjct: 380 taagataggacga 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)