BAC Information

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BAC

Clone NameMSMg01-132G13
Chromosome15 (Build37)
Map Location 56,411,690 - 56,411,825
singlet/doubletsinglet
Overlap genenone
Upstream geneMtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132G13.T7 (MSMg01no132_g13.b1)MSMg01-132G13.TJ (MSMg01no132_g13.g1)
ACCAG339660AG339661
length728718
length of high quality
(start - end)		234 (46 - 279)642 (72 - 713)
definitionCHROMAT_FILE: MSMg01no132_g13.b1 PHD_FILE: MSMg01no132_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:55 2005CHROMAT_FILE: MSMg01no132_g13.g1 PHD_FILE: MSMg01no132_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGACATCATTGTTCCTAGAAGGCAGTGTTCAGTTTTGCAAATG
AGAGGCCCTTGTTCTAGTTTTCACACTGATCTTGGTAAATTGTTGCCTTT
ACCTAAGTCAGTACCCACTTAGGTCCATTTTATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATGTATTTAGATGAATAAT
TACCCTCACAAGTAATTTATTTTTTATTAGAGTACGCGAGACTCAGAGAG
GCATAGAATGAGTTTGAGTCGAAACTATCCTCCATTCTTTATCTAATCGC
TCCCTAAGCGTCAGTCTCATGTTTTCTTTCCTATTTGCACTATGACTCTC
TCTCTCTCTCACTTTCTCGGTCTCTCTCTCACTCTCCCTTCCTCTCTCTT
TCTCTGTACATACACACACACACACACACACACACACACACTCTCATACT
CTCAGTACATACACACACCCTCCGTGAGTCCATTGTTGTATCGCGTGCCT
GGCCATAAATTCCATATTATAGGACGGGCTAGCGGATCTCAGTGTGTCTC
TCAGGTCCTATGTCTCTGAATAAGTCCGATTGTCCCCCCCACTGCCTACT
CCCGTTTGCCAACTATTTTCTCCTAACT

AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGGCTTTTATCATGAAT
GGGTGTTGGATCTTGTCGAATGCTTTTTCCGCATCTAACGAGATGATCAC
GTGGCTTTTGTCCTTGAGTTTGTTTATATAATGGATTACATTGATGGATT
TTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCT
GGATGGATGATTGCTTTAATGTGTTCTTGGATTTGGTTAGCGAGAATTTT
ATTGAGGATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGAAGTTCT
CTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGGGTAATTGTGGCT
TCATAGAATGAGATGGGTAGAGTTCCTTCTACTTCAATTTTGTGGAATAG
TTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGCTCTGGTAGAACTCTG
CACTAAACCCATCTGGTCCTGGGCTTTTTTTTGGCTGGGAGACTATTAAT
GACTGCTTCTATTTCTTTAGGGATATGGGACTGTTTAGATCTTTAACTTG
ATCCTGATTTAAATTTGGTACCTGGTATCGGTCTAGAAATTTGTGCATTT
AGTCCAGGTTTTCCAGTTTTGTTGAGTATAGTCTTTTGTAGAAGGATCTG
ATTGTGTTTTGGATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_g13.b1 MSMg01no132_g13.b1 CHROMAT_FILE:
MSMg01no132_g13.b1 PHD_FILE: MSMg01no132_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:55 2005
         (234 letters)



>mm_chr15_56411481_56412114
          Length = 634

 Score =  248 bits (128), Expect = 3e-70
 Identities = 134/136 (98%)
 Strand = Plus / Plus

                                                                       
Query: 10  ctctgacatcattgttcctagaaggcagtgttcagttttgcaaatgagaggcccttgttc 69
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 210 ctctgacatcactgttcctagaagggagtgttcagttttgcaaatgagaggcccttgttc 269

                                                                       
Query: 70  tagttttcacactgatcttggtaaattgttgcctttacctaagtcagtacccacttaggt 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tagttttcacactgatcttggtaaattgttgcctttacctaagtcagtacccacttaggt 329

                           
Query: 130 ccattttatatatata 145
           ||||||||||||||||
Sbjct: 330 ccattttatatatata 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 97
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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