BAC Information

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BAC

Clone NameMSMg01-132M18
Chromosome15 (Build37)
Map Location 8,570,598 - 8,571,133
singlet/doubletsinglet
Overlap genenone
Upstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633
Downstream geneSlc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132M18.T7 (MSMg01no132_m18.b1)MSMg01-132M18.TJ (MSMg01no132_m18.g1)
ACCAG339941AG339942
length745706
length of high quality
(start - end)
486 (43 - 528)537 (117 - 653)
definitionCHROMAT_FILE: MSMg01no132_m18.b1 PHD_FILE: MSMg01no132_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:25 2005CHROMAT_FILE: MSMg01no132_m18.g1 PHD_FILE: MSMg01no132_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCGGCGGAATTC
ATTTGTATATTACCTCCAGCTAGTGACTTTTCATTCACCCTGGAAAAACT
CCTTCCCACTCACCACGGTTCATATATAGCCCGTGGTCACCCTGAATAAA
GTGTTCACACCAGCTGTTTCACTGAAGATTGCCTAACAGATCTGCTTCAT
TGAGTAGTGTCTAAAAGAGCTGTAACACAAAAATCCTTGAAGAAGGCCTC
ACTATCTCCCAGCCCCAACCCCACCCCACCCCACCCCTGTTCCCCCAACC
TCCAACCCCCCCAACCTCCCACCCCTCCACCACACTCACTCCCACCTGGA
CCAGGATCCTGCAGACCCCACCCATTCATCCTTCCAGGCTGAGATGCAGC
AGCAACATCTGGACACCCAGATGGTGGAAGCAGAGGACACAGAGCCACAG
CTGGGTCGCAGCACACATACCGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTATGTCTGTGCATGTATGTACGCCTTCCTCCTCTCT
CTTCATCTTTCCCACCTCTTCTCCACTTTTAACTTCTTTCCCTTTCATCC
TTCCCACCATATTTTCCTATTCCTTTCTTTTTCTTCCCTTTTTCCCCTCC
CCTTCCCTTCCCTCTTTTTTCTCTCTCTCCCTCCCTTCTTACCCTATTTC
TTCTTCTCTCACCCTTCAACCCAACTATCATCCCTCTTTCCCATG
ATGTGGGAGGCCTGGCGGCGCCTGGGTCCGACTGGAGGTGACCTATAGAA
GGTTTCAGAATACATTTCCAGGCGAACTATGACTCAGCCTTGCTCTCAAG
TTGTTTTGATCGACCCAGTCTGAGGACCAGCATGTAGGCATTGCCCATAG
GGTGGCAGCTCTGTTAAGATGACATCCACATCTAACAGGGAACGCAGGGA
GACGATGAAGTGGGCTGTTCTTGAATTGCCCTAAATTCTCTTCATTGACA
TTGAGATGCTAACCGGGGAAAAAAGATTTCTTCTTTTTCTTCCCCTTCAT
TTCTGTCAAANNTTANNTTCTTATTTTCTTTTTCTGAAACTGTAGTAGCT
GTCGAAAAATGCACGGCTGGAAGCCAAATTCGTCATTTTATCTCCAGTGG
TTGGAGAACTTTGATTTTTCTCTCTAGGAGTAATGTGTCTCCACTTAGAG
GGCGCTAAGTGAAAGCGCTCTCCGGAAGCAGATTTGTTCTGCTGGCTTCC
TTCAATTTGTCAAGAAGACAAAAACCTCGGCAGCCTCACGTGGTAATAAT
GCCTCCAAATTACTTAGCGTCATCTTCTGCCTACTTTTCTTGTCTCTATT
ATCTTGCACGTGAAGTGGAGGAAAAGTGAACACGTTTACAACGTAATGCT
CTGCTTATACATAGATTGCCGAAGCTAATTGTTCTAAGTGAGATGCTTTT
TCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_m18.g1 MSMg01no132_m18.g1 CHROMAT_FILE:
MSMg01no132_m18.g1 PHD_FILE: MSMg01no132_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:25 2005
         (537 letters)



>mm_chr15_8570398_8571333
          Length = 936

 Score =  922 bits (477), Expect = 0.0
 Identities = 522/539 (96%), Gaps = 5/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctgaggaccagcatgtaggcattgcccatagggtggcagctctgttaagatgacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctgaggaccagcatgtaggcattgcccatagggtggcagctctgttaagatgacatc 260

                                                                       
Query: 61  cacatctaacagggaacgcagggagacgatgaagtgggctgttcttgaattgccctaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacatctaacagggaacgcagggagacgatgaagtgggctgttcttgaattgccctaaat 320

                                                                       
Query: 121 tctcttcattgacattgagatgctaaccggggaaaaaagatttcttctttttcttcccct 180
           ||||| ||  |||||||||||||||||| |||||||| |||||||||||||||||| |||
Sbjct: 321 tctctccaaagacattgagatgctaacc-gggaaaaatgatttcttctttttcttctcct 379

                                                                       
Query: 181 tcatttctgtcaaanntt--annttcttattttctttttctgaaactgtagtagctgtcg 238
           ||||||||||||||  ||  |  |||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcatttctgtcaaa--tttaattttcttattttctttttctgaaactgtagtagctgtcg 437

                                                                       
Query: 239 aaaaatgcacggctggaagccaaattcgtcattttatctccagtggttggagaactttga 298
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 438 aaaaatgtacggctggaagccaaattcgtcattttatctccagtgcttggagaactttga 497

                                                                       
Query: 299 tttttctctctaggagtaatgtgtctccacttagagggcgctaagtgaaagcgctctccg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttttctctctaggagtaatgtgtctccacttagagggcgctaagtgaaagcgctctccg 557

                                                                       
Query: 359 gaagcagatttgttctgctggcttccttcaatttgtcaagaagacaaaaacctcggcagc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaagcagatttgttctgctggcttccttcaatttgtcaagaagacaaaaacctcggcagc 617

                                                                       
Query: 419 ctcacgtggtaataatgcctccaaattacttagcgtcatcttctgcctacttttcttgtc 478
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 618 ctcacttggtaataatgcctccaaattacttagtgtcatcttctgcctacttttcttgtc 677

                                                                      
Query: 479 tctattatcttgcacgtgaagtggaggaaaagtgaacacgtttacaacgtaatgctctg 537
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 678 tctattatcttgcacgtgaagtggaggaaaagtgaacatgtttacaacgtaatgctctg 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space:   488002
Effective search space used:   488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)