BAC Information

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BAC

Clone NameMSMg01-132O10
Chromosome15 (Build37)
Map Location 87,700,297 - 87,700,665
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042309, AW049604
Downstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132O10.T7 (MSMg01no132_o10.b1)MSMg01-132O10.TJ (MSMg01no132_o10.g1)
ACCAG340018AG340019
length726702
length of high quality
(start - end)
683 (44 - 726)634 (65 - 698)
definitionCHROMAT_FILE: MSMg01no132_o10.b1 PHD_FILE: MSMg01no132_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:33 2005CHROMAT_FILE: MSMg01no132_o10.g1 PHD_FILE: MSMg01no132_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:33 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAAT
TCTTTTATATTACGACTTAACTTAATTTGGAATCCATTTTGGATAAAGTT
GTATGGGTCTCTAAGAAATGTGTGCCATTGGATCAAATGTTCAATAGAAG
TCTTTGAAATCCAATTTCCCAGAGTACAATTTCACTCAGAAGTTTCTGTA
TTAAATTTTTGTCTGGATGATCTGTTGTTGAGAACATTGCACTAAAACCG
ATCACTATCCTTTTATCTGGACCTGTCTGAGCATACCTGGAAAGGCTTGT
TTTATAACATTACACTTGTCAGTGTGTATGTGTACTGCTGCATATTCATA
ACCACTGCCTCCTCTGGATGGAATGTCCCTTTATTGACATGCAGTGATTT
CTGCATTCCTGATAAACATTGGCTTGAAGCCTGCTTTGTCAGACAGGTGT
ATAGCTACTCCTGCTTGGTTCTGGATTAGCCTCCCTTGGTATATTGCTGT
CTACCCAATCTTTCAGTCAGTGTGCGATTTTTTTTTTTTTTGTCAATGAG
CTATTTGTCCTTCAAGAAACATCAGATATTCTGTGTCTTTTGATTGGAGA
GTTCCAGCTACTAATGATTAAGGCTATTATTGAGAAGTATTCACTGATTC
CTATAATTTTGTTGGCCTTACTCATGGTTGGTCTGAATAATGCTTTTTTT
TCTTAATACCTTATTATTTTAGTTAT
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTACCAGCGAAATTCTTGGTGGGTGTGGCTTTTGTCAGCTTCGTCT
ATTACTGCCACGCTGCCTCAGACACTGTAGTGAGACATTGTTGGAATGAT
CTGGGGATGGAGAAAGTCAGTGGCAACTGGATATGGATATGCTGGGTGAG
AAGCTGCTTCATGTCCTGAACTGGACAGAATGGGGCACAATTCAATATGC
GCCTATAGTTCAGTCTTTAGCATTTCCTTCCAGTTCCAGACAGCGGTTTT
TGACACTGGTTACCATGAATAACCGAAGTAATTCATGTTACTAAAGTAAT
TCAGCAGTTATTGAACTCTTGGAGGATGATCGCTGGAATATGGGGGTGTC
CCTGGTGCAACCACACCTGTATTCAGGGAGGCATCTGTCACCTTTCAGGT
GCAGAGCCTTAGATGAGGCACATTCCTCTGTCACACAGGTTACCCATGTG
TCAGTGGGGATATCGAGTCCAGTGCTATGACATAATGTCATGGAGAAAGT
CAGTGGCTCTGTAGTCAAGTCTGGCCTGAGTGGGGTTCCCAGAGCCTTCC
TTCTCCACTGCTCTCCAAGAGGATCTGCCTGAAGGTTTCCCCTGGACCCT
ACTCCTCTCTTGGGAGGTTCCTCTTTTCATCCTTTGCTATGCACACTTGA
CA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_o10.g1 MSMg01no132_o10.g1 CHROMAT_FILE:
MSMg01no132_o10.g1 PHD_FILE: MSMg01no132_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:33 2005
         (634 letters)



>mm_chr15_87699992_87701025
          Length = 1034

 Score =  574 bits (297), Expect = e-168
 Identities = 345/369 (93%), Gaps = 13/369 (3%)
 Strand = Plus / Plus

                                                                       
Query: 119 atggatatgctgggtgagaagctgcttcatgtcctgaactggacagaatggggcacaatt 178
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atggatacgctgggtgaggagctgcttcatgtcctgaactggacagaatggggcacaatt 365

                                                                       
Query: 179 caatatgcgcctatagttcagtctttagcatttccttccagttccagacagcggtttttg 238
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 366 caatatgcgcctatagttcagtctttaacgtttccttccagttccagacagcggtttttg 425

                                                                       
Query: 239 acactggttaccatgaataaccgaagtaattcatgttactaaagtaattcagcagttatt 298
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 426 acactggttaccgtgaataaccgaagtaattcatgttactgaagtaattcagcagttatt 485

                                                                       
Query: 299 gaactcttggaggatgatcgctggaatatgggggtg-------------tccctggtgca 345
           ||||||||||| ||||||||||||||||||||||||             |||||||||||
Sbjct: 486 gaactcttggatgatgatcgctggaatatgggggtgactacggtatgtgtccctggtgca 545

                                                                       
Query: 346 accacacctgtattcagggaggcatctgtcacctttcaggtgcagagccttagatgaggc 405
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 accagacctgtattcagggaggcatctgtcacctttcaggtgcagagccttagatgaggc 605

                                                                       
Query: 406 acattcctctgtcacacaggttacccatgtgtcagtggggatatcgagtccagtgctatg 465
           |||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 606 acattcctttgtcacacaggttacccatgtgtcagtggggatgtccagtccagtgctatg 665

                    
Query: 466 acataatgt 474
           |||||||||
Sbjct: 666 acataatgt 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)