BAC Information

Click to search

BAC

Clone NameMSMg01-133I08
Chromosome15 (Build37)
Map Location 82,877,371 - 82,877,791
singlet/doubletsinglet
Overlap genenone
Upstream geneNhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1
Downstream geneSerhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133I08.T7 (MSMg01no133_i08.b1)MSMg01-133I08.TJ (MSMg01no133_i08.g1)
ACCAG340478AG340479
length701735
length of high quality
(start - end)
421 (65 - 485)161 (75 - 235)
definitionCHROMAT_FILE: MSMg01no133_i08.b1 PHD_FILE: MSMg01no133_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:21 2005CHROMAT_FILE: MSMg01no133_i08.g1 PHD_FILE: MSMg01no133_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CGGACAATGCCAGAGAAGGAGAAACTCTGCTAACCAAGGGAGTCTCCCAC
ATTGCACCGAGCCCAGAGCCTAGCTGGTCATAGTAGACTTCAACGTTAAT
TAGCAGTTTCCCCACACGTGCACGTACATACCCACACACATACATACCCA
TACACATATGCACATAATTTAAAATTAAAAGCAAACTCTTGCTGGGAGGT
GGTGGCGCACGCCTGTAATCCTAGCCTTCGGGAGGCAGAGGTAGGTGGAG
TTTGAGGCCAGCCTGGTCTACAGAACAAAGACCAGGACAGCCAGGGCTAT
GCAGAGAAACCCTGCCTCAAAAAACCCAAAACAAACACCACCACATAAAA
ACAGGGCTTCCTGTATGCTGGATCAGTAAAGATACTGAGATGCAGTCAAT
CTTTTTTACCCTAAAAATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGCGTGCTATATCTCCCATCACTCTCCTTAAACGAAATTAC
TACCCCCACTTTATTCCTCATATCCCCACCCTCATATTATATCCCCCCCC
TCTTTCGTCATTCTCCCTCTCTTCTCTCTTCCTCTCTANTCTACTCTTAC
CCATTTTACCTCTATCCCCCTCCCCCCTTATCTCGCCTCCCTCTGTTCAT
T
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTATATAAGCCAGGCTGGTCACAGA
GAACAGTCTGCCTCTGCCTTCCCAGTGCCGAGATTAAAGGTTGTGCACCA
CCACACCTGGCCTTGTAAGTTTGTTTGTTTATGTATTTATGTATTTATGT
ATTTATATATGTGTGTATTTGTGTATTTATGTATCANNNCNGCCCCCCCC
CCCNCCCTCCCCCCTTTCCTCCTTTTTCTTTATCTCTCCCTCTTCCTTCG
CCCCCGCCNCCCCTTTTTTTTANTCCCTTCATCCCTCTCCTCAAAAACAT
CTCCCTATCGTTTCCTCCTACCCTATATTTTTCCCCCCCCCCTATTCTAC
CTTTTTTCCCTACCTCCTGCCTTCCTCTCCCTTTTTCCTCCACACTCCTC
TATACCACCCTCTTTTCACTGTCACCATATTAATATTCCTCCATTCCCCC
AATCGTCAATTCCCCTATTTTTTCGCTTAACACCCCTCTCATATTTCGAC
CCATTCCCTTTTCCCCTCCTTTTTTCCTTCCCTACGTCGTTTTACAATTC
CGTTCATTTCCCCCTCCCGTCTATTAAACCCGTCATTCTCTTTTTTCCCC
TTTCATATCCTCCCTTCCTCTTACCTCCCATTATTATTCCCTTTTTTTCC
ACTCCCTTTTTTTTCCCGCCCCCCCCGTCTAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_i08.b1 MSMg01no133_i08.b1 CHROMAT_FILE:
MSMg01no133_i08.b1 PHD_FILE: MSMg01no133_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:21 2005
         (421 letters)



>mm_chr15_82877171_82877991
          Length = 821

 Score =  806 bits (417), Expect = 0.0
 Identities = 420/421 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaggagaaactctgctaaccaagggagtctcccacattgcaccgagcccagagcctagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gaaggagaaactctgctaaccaagggagtctcccacattgcaccgagcccagaggctagc 260

                                                                       
Query: 61  tggtcatagtagacttcaacgttaattagcagtttccccacacgtgcacgtacataccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtcatagtagacttcaacgttaattagcagtttccccacacgtgcacgtacataccca 320

                                                                       
Query: 121 cacacatacatacccatacacatatgcacataatttaaaattaaaagcaaactcttgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacatacatacccatacacatatgcacataatttaaaattaaaagcaaactcttgctg 380

                                                                       
Query: 181 ggaggtggtggcgcacgcctgtaatcctagccttcgggaggcagaggtaggtggagtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggtggtggcgcacgcctgtaatcctagccttcgggaggcagaggtaggtggagtttg 440

                                                                       
Query: 241 aggccagcctggtctacagaacaaagaccaggacagccagggctatgcagagaaaccctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggccagcctggtctacagaacaaagaccaggacagccagggctatgcagagaaaccctg 500

                                                                       
Query: 301 cctcaaaaaacccaaaacaaacaccaccacataaaaacagggcttcctgtatgctggatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctcaaaaaacccaaaacaaacaccaccacataaaaacagggcttcctgtatgctggatc 560

                                                                       
Query: 361 agtaaagatactgagatgcagtcaatcttttttaccctaaaaatacgtgtgtgtgtgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtaaagatactgagatgcagtcaatcttttttaccctaaaaatacgtgtgtgtgtgtgt 620

            
Query: 421 g 421
           |
Sbjct: 621 g 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)