BAC Information

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BAC

Clone NameMSMg01-133J17
Chromosome15 (Build37)
Map Location 67,765,569 - 67,766,103
singlet/doubletsinglet
Overlap genenone
Upstream geneNdrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000, EG665945, EG633752, Khdrbs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133J17.T7 (MSMg01no133_j17.b1)MSMg01-133J17.TJ (MSMg01no133_j17.g1)
ACCAG340540AG340541
length714870
length of high quality
(start - end)
529 (66 - 594)---
definitionCHROMAT_FILE: MSMg01no133_j17.b1 PHD_FILE: MSMg01no133_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:27 2005CHROMAT_FILE: MSMg01no133_j17.g1 PHD_FILE: MSMg01no133_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATCCAAAGAGGATCCGCGGAATTCT
TCTTTCCAAAGCCTCCAGATGAAACATGACCTTATCATGCTGTGATTTTA
GAAGTTAATTAATTGAAATGCATCTTCTCTGTGCAAGGCATAAACAGCAG
GCCTATAGCTTTGCTTTGGGAATGGCAGAAAATAATAGAAGAGTTGATTC
CCTGCTACAAAATGACATTTCAGGACTAATGCAATTGCCCTCCGTGCAGT
AAATGTTTTATTCTTTAAAAAAAAAAAAAAAAGCTGTAAATTAGGTTCCA
TCATTTGGCTTGTTCTACTGATGAGAGTATATGGTCATTTGCCTAAAATC
AAGCAGACAGAATATATTAGAGTCAAGATTAGTTCCCAGAACCAGAGAAA
CTGCTCAGTCAGTTTAGTGCTTGCTATGCAAGCATGAGAACTTAAGTCTG
ATCCCCAGCACCTATTTAACATGCTGGATGTGATGCTACATCCTCCAATC
CTAGTACTTAGGAGGCAGATATTGGGGGAGGAGGTCCCTGGGGCTTGTTG
GCTAGCCAACCTAGCCAAATTAGTGATCCCCAAGTCCCAGTGAGAATCTC
TATTTGAAAAAATAAGTAGATCACTGTTTTTCTCATGAACCTGTACATAC
ATGCATGTGTACTACATAGATAATGTGGACCAACACACATGAGAACATAT
ATACATATTTTCTC
CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTACATACATCCTTGATCTAAATGTACCCA
CGGCAGGTGAGAGAGAGACCCACGGGTAGAGAGAGAGAAAGAGAGATGAG
AGAGATGAGAGATGAGAGAGTAGATAGAGAGATTAGAGAGAGAGTAGAGA
GAGAGCAGAAACCTTCCTCCCTTTGCTATGTGAGCCTGTAGCATAGTGAT
CTCACTAGCCTCACCCCTCTCTCGCAATGTACTTCCTTCCAACAAGCACC
ATACCCCTCTCTCAACAAGTACCACACTCCACTCCTACTAAGGTTTTCTT
CTTCTCTATTACGTGCTCACTTCCTCATGGGTCCAATTTTTTTAATAAAT
TTCCCCAANACCAGAGCCCCCAGTGTATTGCTATCACTGTATTCTATTAC
ATTGCCGCTCGCTTGATGTTCATAAAAAGGTATATATTCCGCGGCCGTGA
GGTCTCATATTTGACTTGTACACTTTATGGGCGAGCAATGTTACCTGACT
TTTTTCGCCTGCACTGTCTTCTTCGCCCTTTCTCCTCTGCTTCCCGCTCT
CCCGCACTGTTTTCCACTTTTCGATCCCCTTTACTCCACCCCCTTCCTCT
TTTCTTTTGCTCGCCCCTCCCCCTCGTCCTCCTTTCACGTATCACCTCCT
TCCCGTAGATGTTTCCCCGTCCCTCTTCCCGTCCTCCTGTACCTCTCCAT
GCCTCCTCCAACTCGCTCTTCCATTTCTCCCACCCCCTTGTGTTATTCCC
CTTTTTCCGCCACTCTCTTGTACCCCCGTCGTCCCTTGCACCCACCCCCC
CCTCACCTCACTCTCTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_j17.b1 MSMg01no133_j17.b1 CHROMAT_FILE:
MSMg01no133_j17.b1 PHD_FILE: MSMg01no133_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:27 2005
         (529 letters)



>mm_chr15_67765375_67766303
          Length = 929

 Score =  984 bits (509), Expect = 0.0
 Identities = 526/535 (98%), Gaps = 6/535 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatgaaacatgaccttatcatgctgtgattttagaagttaattaattgaaatgcatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cagatgaaacatgaccttatcatgctgtgattttagaagttaattaattgaaatgcatct 254

                                                                       
Query: 61  tctctgtgcaaggcataaacagcaggcctatagctttgctttgggaatggcagaaaataa 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 255 tctctgtgcaaggcataaacagcaggcctatagctctgctttgggaatggcagaaaataa 314

                                                                       
Query: 121 tagaagagttgattccctgctacaaaatgacatttcaggactaatgcaattgccctccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tagaagagttgattccctgctacaaaatgacatttcaggactaatgcaattgccctccgt 374

                                                                       
Query: 181 gcagtaaatgttttattctttaaaaaaaaaaaaaaaa------gctgtaaattaggttcc 234
           |||||||||||||||||||| ||||||||||||||||      |||||||||||||||||
Sbjct: 375 gcagtaaatgttttattcttaaaaaaaaaaaaaaaaaaaaaaagctgtaaattaggttcc 434

                                                                       
Query: 235 atcatttggcttgttctactgatgagagtatatggtcatttgcctaaaatcaagcagaca 294
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 435 atcatttggcttgttctactgatgagagtgtatggtcatttgcctaaaatcaagcagaca 494

                                                                       
Query: 295 gaatatattagagtcaagattagttcccagaaccagagaaactgctcagtcagtttagtg 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaatatattagagtcaagattagttcccagaaccagagaaactgctcagtcagtttagtg 554

                                                                       
Query: 355 cttgctatgcaagcatgagaacttaagtctgatccccagcacctatttaacatgctggat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cttgctatgcaagcatgagaacttaagtctgatccccagcacctatttaacatgctggat 614

                                                                       
Query: 415 gtgatgctacatcctccaatcctagtacttaggaggcagatattgggggaggaggtccct 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtgatgctacatcctccaatcctagtacttaggaggcagatattgggggaggaggtccct 674

                                                                  
Query: 475 ggggcttgttggctagccaacctagccaaattagtgatccccaagtcccagtgag 529
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggggcttgttggctagccaacctagccaaattagtgatccccaagtcccagtgag 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)