BAC Information

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BAC

Clone NameMSMg01-134K02
Chromosome15 (Build37)
Map Location 21,977,861 - 21,978,602
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134K02.T7 (MSMg01no134_k02.b1)MSMg01-134K02.TJ (MSMg01no134_k02.g1)
ACCAG341298AG341299
length1,2131,360
length of high quality
(start - end)		742 (90 - 831)184 (149 - 332)
definitionCHROMAT_FILE: MSMg01no134_k02.b1 PHD_FILE: MSMg01no134_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:13 2005CHROMAT_FILE: MSMg01no134_k02.g1 PHD_FILE: MSMg01no134_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCATTTTTTNTNNNGCAATGGGCGCTATAGACTCCTAAGGGAGAGGAT
CCGCGGAATTCATTACAGTCCATTATTCCTTTTGCAGCGCGGATACAAGC
ACTTTTGGCTGAGGGCTCATATGGAAAGATCTATTGAACAAGTTTGTGCC
AGAGACCCTATATTGAAAGTTTATAAATATAATTTCATTGCTACATAGCA
TGTTATGACATGAGAGTTTTTCAGTACCACATATTTGGGGCAATTTCTTC
TTTGTTATCTTGCATACATGAGCTACTTTTGATAGCATGCAAAATGTTTG
AATCACAAAATCATTAGTGAGAAGTAAGAGTGCAGGTCTGCATGTTTTCC
TTATTTTTTTCCAAGTTTGCATTAAGCTTTGCTGAAAAATTCACTTTATT
CGCTGCATGACATTTATGCTGAATTCAGCTATGAGTAATGTAACAGAGGG
GTGTGGACTCTGACAGGAGAATTTGCATTTACTCTCCTTTTCTAAAGAAA
AGTAATGAAGCAGGAAATAGTCACAAATAACAAGAAGCATTGAAACACAA
CAATCTCCACTATCCTATAAATGAGAGAAGGTGGCAGAAGAAATCACAGC
TTTGCACTCACCTATGACTGCAAAGCAGTCTCCTTCATCGTTTTTCATTC
TTATGACCTTCAAATGTCAAACATTCCTCTAGAACTTCAGATAATGAAAT
ATAATTTGAGTGTTGAATCATAACTTCATGCTAATTTAGGCTCAGTGCCC
ATAAATGATTTATTCATTCTTGAATTCAGTATTATCTGCCCATATGAATG
GTATTTTTTTTTCTTAATGAGGGCCACTTAGTTAATTAGCACTCTTTATT
TGTAGACATATCTTTTGTGACAAGTCGTGGCTCTTATTGGAAAATTAGCT
TTTTAAAAATAAAAGTCCCTTCCCGAAAAAAAAAAGTGGCCTAAAAAATT
ATTTTTCTGACCTCCCATTTTTTTTGAAGAAAAAAAAGAAAACCTATTTT
TTAATTTTCTTTTTAACCACCCTCTTGGGAATCTTCTCTCAAGACTTTTC
TTTTGTAATAATGAATATTTAACCTCCTCGCTCCAAAACAAAAAGTTAGG
CCTTTTTTTTCCTAAAAAATTTTACCTCGAATGTATGTTCGATTCCCTCT
TACTTCTTGATTTTAAATATATTTATACTCCCTTCCCCCTAATCCTTTTT
TGTTCTCTACTCC

NCCACCTCTGTTTTTTTAGCTGGGNAGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTATGCCAAAAAAGAAAA
AAAGGGGGGAGATGTGGGAACTGTTTGTGGCAGTAGTCCCCAGATGGNTC
CCAGGACTGCAGCCAAGTCTTATGACTTCCACCTGACTTCCACATACACC
CGAAAATAAGCCATGTCCATCGTGAGAGCTGTGCAGGCGCACCATGACAC
AAGATCAGGCTATTTGACGAAGGCCAATGAACTGAGATTATGTGGACTGT
GCTGATGGGGGGTGGTTAAAAGGTTATATAAGGGATTTTTTTTGTTTGNT
ATTGTAATATTCTCTTTTATATGCCTTTCCTTCCCTCTGTCTATCCCTTG
GCTTTTTTTTTTTTTACACACAAGCACCCCCCCCTCTTTTTCTGGATTCT
TACCCCCCCCCTTTTTTTCCCCCCCCTTCCTCTTTCTTTTTCTCTTCTTG
ATACACAAATGTTTATTTTTCTTCCTTCTTCCTTTTCTACTTCTTTTCTT
GTATCCTTATTTTCATTCTTTTTACTCATTTTTTCTTTCCTCTACTATTT
ATTTTCCTTTTTTTTATTCTTCTTTTTTTCCCTTTTTTCTATTTTCCTTC
CTTTTCTTTTTCTCTCTCTTCCCTTTACTCTATTTTTCATTCATTTCTTA
TCTCTAACTGTCTCCTATCCTCTTTCAACTTTCCTTACTCCTTATCTTCC
TTTCTTTTTTCTCTTTTTCTTCTTCTCTCTTCTTCTTTCTTTCTTCTTTC
TTCCCTTTTCCCTCCTTTCACTCTTCTTCTTCTCTCTCTTTATTCCTTTT
TTTTTCTCATGTTTCTCCCTCTATTCTTTCCTCTTATCTTTCCTCTCCTT
TCCTACCTTTTAATTCTATTCTTTTATTTTTCTTCTTTCTTCCTATTCTC
TCTTTAATTTTATAATTTTTATTACCCCTCCTTTATATACACTTTTGTTG
TTTTTCTATTTCATTTTATTCTTTTTCCCTTCCTTTCTTTTATCTATTCC
TTTTTCACTACATTTTTTTTCTTATATTCTATCATTTTCTCATCATTCTT
ATTTTCTATTCTATGCTTATCTTCTTTTCATCTCTATATTTCTCACCTTC
TTTCTTTCTTTTATTTTCTTCTTCTACCTTTTTCCTTTCCCCTCTTCACT
CTTTATTTTTCACTTTTTTCTATCTTCTTTCAATACTTTCTCTTCTTTCT
CTTTCTTCTCTTTCTCTTTTTTCTATACTCTTTCTTCTTTCCTTACTTTT
CTATCTATTCTGTTCATTCATATCTTTTATTCTTTCTACACCACCATTTT
CTCTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_k02.b1 MSMg01no134_k02.b1 CHROMAT_FILE:
MSMg01no134_k02.b1 PHD_FILE: MSMg01no134_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:13 2005
         (742 letters)



>mm_chr15_21977661_21978802
          Length = 1142

 Score = 1388 bits (718), Expect = 0.0
 Identities = 736/742 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cggatacaagcacttttggctgagggctcatatggaaagatctattgaacaagtttgtgc 60
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 942 cggatacaagcacttttggctgagggctgagatggaaagatctattgaacaagtttgtgc 883

                                                                       
Query: 61  cagagaccctatattgaaagtttataaatataatttcattgctacatagcatgttatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 cagagaccctatattgaaagtttataaatataatttcattgctacatagcatgttatgac 823

                                                                       
Query: 121 atgagagtttttcagtaccacatatttggggcaatttcttctttgttatcttgcatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 atgagagtttttcagtaccacatatttggggcaatttcttctttgttatcttgcatacat 763

                                                                       
Query: 181 gagctacttttgatagcatgcaaaatgtttgaatcacaaaatcattagtgagaagtaaga 240
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 762 gagctacttttgatagcatgcaaaatgtttgaatcacgaaatcatgagtgagaagtaaga 703

                                                                       
Query: 241 gtgcaggtctgcatgttttccttatttttttccaagtttgcattaagctttgctgaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 gtgcaggtctgcatgttttccttatttttttccaagtttgcattaagctttgctgaaaaa 643

                                                                       
Query: 301 ttcactttattcgctgcatgacatttatgctgaattcagctatgagtaatgtaacagagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ttcactttattcgctgcatgacatttatgctgaattcagctatgagtaatgtaacagagg 583

                                                                       
Query: 361 ggtgtggactctgacaggagaatttgcatttactctccttttctaaagaaaagtaatgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ggtgtggactctgacaggagaatttgcatttactctccttttctaaagaaaagtaatgaa 523

                                                                       
Query: 421 gcaggaaatagtcacaaataacaagaagcattgaaacacaacaatctccactatcctata 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 522 gcaggaaatagtcacaaataacaagaagcattgaaacacaacaatctccattatcctata 463

                                                                       
Query: 481 aatgagagaaggtggcagaagaaatcacagctttgcactcacctatgactgcaaagcagt 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 462 aatgagagaaggtggcagaagaaatcacagccttgcactcacctatgactgcaaagcagt 403

                                                                       
Query: 541 ctccttcatcgtttttcattcttatgaccttcaaatgtcaaacattcctctagaacttca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ctccttcatcgtttttcattcttatgaccttcaaatgtcaaacattcctctagaacttca 343

                                                                       
Query: 601 gataatgaaatataatttgagtgttgaatcataacttcatgctaatttaggctcagtgcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gataatgaaatataatttgagtgttgaatcataacttcatgctaatttaggctcagtgcc 283

                                                                       
Query: 661 cataaatgatttattcattcttgaattcagtattatctgcccatatgaatggtatttttt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cataaatgatttattcattcttgaattcagtattatctgcccatatgaatggtatttttt 223

                                 
Query: 721 tttcttaatgagggccacttag 742
           ||||||||||||||||||||||
Sbjct: 222 tttcttaatgagggccacttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1142
Length adjustment: 10
Effective length of query: 732
Effective length of database: 1132
Effective search space:   828624
Effective search space used:   828624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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