Query= MSMg01no135_a11.b1 MSMg01no135_a11.b1 CHROMAT_FILE:
MSMg01no135_a11.b1 PHD_FILE: MSMg01no135_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:02 2005
(477 letters)
>mm_chr15_11523284_11524159
Length = 876
Score = 739 bits (382), Expect = 0.0
Identities = 448/472 (94%), Gaps = 7/472 (1%)
Strand = Plus / Plus
Query: 8 gaattcttcatattccatactttcaagcttaaaattttccctaattcatttaaaatatat 67
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 208 gaattcttcatatttcatactttcaagcttaaaattttccctaaatcatttaaaatatat 267
Query: 68 gttaatcaacaccgttaatttaaaagtcgccatttaaaatacacactttagagatttgtc 127
||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 268 gttaatcaacaccattaatttaaaagtcgtgatttaaaatacccactttagagatttgtc 327
Query: 128 ccatgctaact-gctaggtaggaggtcaagttgaaagtcagacc--ctaggaaggtacat 184
||||||||| | |||||||||| ||||||||||||||||| | |||||||||||| |
Sbjct: 328 ccatgctaa-tggctaggtaggtggtcaagttgaaagtca---caactaggaaggtacgt 383
Query: 185 ctcctgttagttgtggaactttggttttagctgggtgaatattttgtcagatgaaaataa 244
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 384 ctcctgttagttgtggaactttggttttagctgggtgaatatttcgtcagatgaaaagaa 443
Query: 245 tgtgaaggaacaagtagcacaactgtcatcatgcacattgttacaaaggaacagaaacct 304
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 tgtgaaggaacaggtagcacaactgtcatcatgtacattgttacaaaggaacagaaacct 503
Query: 305 tgtgcgagggtggcaggcacaggggtggctgtgtagaactggccagcaaagacctttctg 364
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 tgtgcgagggtggcaggcacaggggtggctgcatagaactggccagcaaagacctttctg 563
Query: 365 agagaatgctgtctgagaggtttctgaatattaaaaaacgcaccatggcttagagacctc 424
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 564 agagaatgctgtctgagaggtttctgaatattaaaaaatgcaccgtggcttagagacctc 623
Query: 425 agcgggagttctggaatttctactcaaggtcaagaaagaaagaaagaaagaa 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 624 agcgggagttctggaatttctactcaaagtcaagaaagaaagaaagaaagaa 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space: 404422
Effective search space used: 404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_a11.g1 MSMg01no135_a11.g1 CHROMAT_FILE:
MSMg01no135_a11.g1 PHD_FILE: MSMg01no135_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:02 2005
(633 letters)
>mm_chr15_11691503_11692535
Length = 1033
Score = 710 bits (367), Expect = 0.0
Identities = 385/391 (98%)
Strand = Plus / Minus
Query: 242 gaacaaggtaaatgatgctgcttatatacccctccgtgtgacgtgtcagctcctgattag 301
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1033 gaacaaggaaaatgatgctgcttatatacccctccatgtgacgtgtcagctcctgattag 974
Query: 302 ctgctcactcatcaccctactactacgccccgggatgggcagtgacttggcacgaattta 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 ctgctcactcatcaccctactactacgccccgggatgggcagtgacttggcacgaattta 914
Query: 362 ctcttgcacctgcgcacattacttgtttaccaattaggcacagtggaggctcgtgatggt 421
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 913 ctcttgcacctgcgcacattacttgtttaccagttaggcacagcggaggctcgtgatggt 854
Query: 422 gattgctcacggctctccacaggaaaagagcctggttgaactatgaaatgctagtaagga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 gattgctcacggctctccacaggaaaagagcctggttgaactatgaaatgctagtaagga 794
Query: 482 gagtacaagtgaaccatgaagagaacatttcatgttgggggatctgtcaatcaaatcacc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gagtacaagtgaaccatgaagagaacatttcatgttgggggatctgtcaatcaaatcacc 734
Query: 542 acagagaggatggagttaacttgcaggaaactttatggaaacctttgcattgtggagacc 601
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 733 acagagaggatggagttaacttgcaggaaacttcatggaagcctttgcattgtggagacc 674
Query: 602 aggaggcaagtttagaactgacattttgaat 632
|||||||||||||||||||||||||||||||
Sbjct: 673 aggaggcaagtttagaactgacattttgaat 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
