Query= MSMg01no135_k23.b1 MSMg01no135_k23.b1 CHROMAT_FILE:
MSMg01no135_k23.b1 PHD_FILE: MSMg01no135_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:52 2005
(532 letters)
>mm_chr15_75915503_75916434
Length = 932
Score = 959 bits (496), Expect = 0.0
Identities = 520/528 (98%), Gaps = 1/528 (0%)
Strand = Plus / Plus
Query: 5 gaattctaggcatgcacaactgaatagcaaaactgtatctcgaaagataagctgaacagc 64
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctaggcaagcagaactgaatagcaaaactgtatctcgaaagataagctgaacagc 265
Query: 65 cagatggtgacgcatggctttaatcccagcacttgggaggcagaggcaggcagatgtctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagatggtgacgcatggctttaatcccagcacttgggaggcagaggcaggcagatgtctg 325
Query: 125 cgtttgaggtcagccttgtttccaaagtgagttccaggacagccagggctacacagaggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cgtttgaggtcagccttgtttccaaagtgagttccaggacagccagggctacacagaggc 385
Query: 185 agaaaagaaaaaaataaaaaaaaaaaataaaaaaaaacaaaccaaaaaagtacatcactg 244
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 386 agaaaagaaaaaaataaaaaaaaaata-aaaaaaaaacaaaccaaaaaagtacatcactg 444
Query: 245 atgttttcaaattcagtttaattacctgtacagtctgttgtggattttaaaaataaacta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgttttcaaattcagtttaattacctgtacagtctgttgtggattttaaaaataaacta 504
Query: 305 tgtcagaccatgcataatcagagttcatttaatttattagatgtcccatgacaaatctgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtcagaccatgcataatcagagttcatttaatttattagatgtcccatgacaaatctgt 564
Query: 365 tttattttaggccctggtttcggttaagatggcatggtaggtaccacagtaacaacaccc 424
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttattttaggtcttggtttcggttaagatggcatggtaggtaccacagtaacaacaccc 624
Query: 425 accgcccaccgctgttctccaagcaccaaagcccaggatgacagcagaaggaactgcgca 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 accgcccacggctgttctccaagcaccaaagcccaggatgacagcagaaggaactgcgca 684
Query: 485 ggtgtggttcatctacagaccctgagaaggggatcatcctcggttatc 532
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 ggtgtggttcatctatagaccctgagaaggggatcatcctcggttatc 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_k23.g1 MSMg01no135_k23.g1 CHROMAT_FILE:
MSMg01no135_k23.g1 PHD_FILE: MSMg01no135_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:52 2005
(556 letters)
>mm_chr15_76075732_76076687
Length = 956
Score = 719 bits (372), Expect = 0.0
Identities = 375/376 (99%)
Strand = Plus / Minus
Query: 181 cttacaacacgaaccacgacacccagacacttgcttgctttaagacacagcattcacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 cttacaacacgaaccacgacacccagacacttgcttgctttaagacacagcattcacagc 897
Query: 241 tgggtggtagtggcacatgccttgaggcagaggcgggtggatctcttgagtttgaggcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tgggtggtagtggcacatgccttgaggcagaggcgggtggatctcttgagtttgaggcca 837
Query: 301 gcctgatctacagagcgagttccaggacagccaagccagcaccgcatagtgagaccctgt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 836 gcctgatctacagagcgagttccaggacagccaagccagcactgcatagtgagaccctgt 777
Query: 361 cctgacaaacaacaacaaaagccacaacattcattttatccacacctagtccagatcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cctgacaaacaacaacaaaagccacaacattcattttatccacacctagtccagatcaag 717
Query: 421 agacttaatcgtttaattgtcccattctctccatactcttgtcacttaacctcagatcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agacttaatcgtttaattgtcccattctctccatactcttgtcacttaacctcagatcct 657
Query: 481 caaaataatcttgtcaggacatagagggtgaggccaactccctgcttcacttctgggggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 caaaataatcttgtcaggacatagagggtgaggccaactccctgcttcacttctgggggg 597
Query: 541 tggggcggggagaagg 556
||||||||||||||||
Sbjct: 596 tggggcggggagaagg 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
