BAC Information

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BAC

Clone NameMSMg01-136C10
Chromosome15 (Build37)
Map Location 35,509,995 - 35,622,823
singlet/doubletdoublet
Overlap geneVps13b, EG666183
Upstream geneNpal2, Kcns2, Stk3, Osr2
Downstream geneCox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136C10.T7 (MSMg01no136_c10.b1)MSMg01-136C10.TJ (MSMg01no136_c10.g1)
ACCAG342430AG342431
length699698
length of high quality
(start - end)		613 (54 - 666)617 (82 - 698)
definitionCHROMAT_FILE: MSMg01no136_c10.b1 PHD_FILE: MSMg01no136_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:26 2005CHROMAT_FILE: MSMg01no136_c10.g1 PHD_FILE: MSMg01no136_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,622,591 - 35,622,823)(35,509,995 - 35,510,611)
sequence
CCCCNTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGAGGCATACCGAATGGCAGAGAAGCACTTGA
AAAAATGTTCAGCATCCTTAATCATCATGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGTGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGTCAGGAATGCTTTTAAG
GGAAGGTGCCAAATTTTTGGAGGCAGAGTTTCCAGGTTTCTTATCAAGTC
TTTGTGAGGTTAGCAGGAAAACTGAAGGGTACTGGGAATATCTAATACTG
GAAGCCTAGCTGCCTGGGACACAGGAGCTCTGGCGGGAGCTCCTCTCCAC
TGTGTGGCTCAGGGTAAAAACCCTCTTAAGCCTGTGAGGATATTTTGTTT
TTCCTTATAGCACACACAGAGACACACATGATTAAAAGTCCTTCTTTTA

CCCCNGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCCTTCTATGAAAATAG
AATATGGCATCCTCTCTTTTTTTTCTTTTTTCTTTAGTTTAACGTGTCAT
TACAAAGTCTACAGTTTCATTAAATGAGAAAATAATCATTCTAGTAGCAG
GCAATGTGCATTTTTAGGACAATTTTAAATGTGGAGACTGCCAATTTCTG
TTAATGTTTCAGTGGCATTGATATTTTCTAATATCTAATTTTAATAACTT
GATTAAAAGCCAAATGAGTAACTTCACCTCAGTCAGTATATATCAACAAC
AATTTCTCTTAAAGTGCTCAGGCCATCCTTCAATTTGGTTAAGCTTGAAT
TTGAAGAGCTATGTTTCTAGTTATGGAATTAGTAGGAAGCATAAAAACTA
CATTTTGTGGATTTATGTGTTTTAGAAGTTAGTTGCTTTTATCATGCAGT
TTAGTTTAAAATTCCATTCATTTGTATTTAATTAGATATTTAATTTCAAT
GGAAAATATTAAAGAATTGAAGGTAGATATTAAAGTGTAATGTGCTCAGA
TCAAATGTGGCTCAACAATATTTTTCTCTCTTAGAGTAGAAAAAGATTCT
ACTTTAAGAATTTTCTCCTTGGGCTAGACTTCCCTCGCCCTACTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_c10.b1 MSMg01no136_c10.b1 CHROMAT_FILE:
MSMg01no136_c10.b1 PHD_FILE: MSMg01no136_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:26 2005
         (613 letters)



>mm_chr15_35622005_35623017
          Length = 1013

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 381 tcaggaatgcttttaagggaaggtgccaaatttttggaggcagagtttccaggtttctta 440
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tcaggaatgcttttaagggagggtgccaaatttttggaggcagagtttccaggtttctta 760

                                                                       
Query: 441 tcaagtctttgtgaggttagcaggaaaactgaagggtactgggaatatctaatactggaa 500
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 759 tcaagtctttgtgaggttagcaggaaaactgaagggtactgggagtatctaatactggaa 700

                                                                       
Query: 501 gcctagctgcctgggacacaggagctctggcgggagctcctctccactgtgtggctcagg 560
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gcctcgctgcctgggacacaggagctctggcgggagctcctctccactgtgtggctcagg 640

                                                                
Query: 561 gtaaaaaccctcttaagcctgtgaggatattttgtttttccttatagcacaca 613
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gtaaaaaccctcttaagcctgtgaggatattttgtttttccttatagcacaca 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_c10.g1 MSMg01no136_c10.g1 CHROMAT_FILE:
MSMg01no136_c10.g1 PHD_FILE: MSMg01no136_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:26 2005
         (617 letters)



>mm_chr15_35509795_35510811
          Length = 1017

 Score = 1139 bits (589), Expect = 0.0
 Identities = 610/617 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgccttctatgaaaatagaatatggcatcctctcttttttttcttttttctttagttta 60
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccttctatgaagatagaatatagcatcctctcttttttttcttttttctttagttta 260

                                                                       
Query: 61  acgtgtcattacaaagtctacagtttcattaaatgagaaaataatcattctagtagcagg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 acgtgtcattacaaagtctacagtttcattaaatgagaaaaaaatcattctagtagcagg 320

                                                                       
Query: 121 caatgtgcatttttaggacaattttaaatgtggagactgccaatttctgttaatgtttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgtgcatttttaggacaattttaaatgtggagactgccaatttctgttaatgtttca 380

                                                                       
Query: 181 gtggcattgatattttctaatatctaattttaataacttgattaaaagccaaatgagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggcattgatattttctaatatctaattttaataacttgattaaaagccaaatgagtaa 440

                                                                       
Query: 241 cttcacctcagtcagtatatatcaacaacaatttctcttaaagtgctcaggccatccttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcacctcagtcagtatatatcaacaacaatttctcttaaagtgctcaggccatccttc 500

                                                                       
Query: 301 aatttggttaagcttgaatttgaagagctatgtttctagttatggaattagtaggaagca 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttggttaagcttgaatttggagagctatgtttctagttatggaattagtaggaagca 560

                                                                       
Query: 361 taaaaactacattttgtggatttatgtgttttagaagttagttgcttttatcatgcagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaaactacattttgtggatttatgtgttttagaagttagttgcttttatcatgcagtt 620

                                                                       
Query: 421 tagtttaaaattccattcatttgtatttaattagatatttaatttcaatggaaaatatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtttaaaattccattcatttgtatttaattagatatttaatttcaatggaaaatatta 680

                                                                       
Query: 481 aagaattgaaggtagatattaaagtgtaatgtgctcagatcaaatgtggctcaacaatat 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 aagaattgaaggtagatattaaagtgtaatgtgctcagatcaaatgtggctcaacaatgt 740

                                                                       
Query: 541 ttttctctcttagagtagaaaaagattctactttaagaattttctccttgggctagactt 600
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 ttttctctcttagagtagaaaaagattctactttaaaaattttctccttgggctagactt 800

                            
Query: 601 ccctcgccctactatat 617
           |||||| ||||||||||
Sbjct: 801 ccctcgtcctactatat 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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