TATTTNNNNNATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGT
TATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGAT
ATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGT
TGGTGGTCTTTTTGTCTTGTTGACGGTGTCTTTTGCCTTGCAGAAACTTT
GGAGTTTCATTAGGTCCCATTTGTCAATTCTCGTTCTTACAGCACAAGCC
ATTGATATTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCT
TTTCTTCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAA
GTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGAA
TCGATTCGAATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATT
GTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGA
AGATAAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTA
TTCCATTGGTCTACTGGTCTGTCTCTATACCAGTACCATGCAGTTTTTAT
CACAATTGTTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGAT

AAAAANNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAAATCCACCTTGC
AGAAACCAAGTAAATAGTGTATTTCACATCTCTATCAGAATAGATTATCT
CCTATATTTTATTTTATCTTCTCTGAAATTTAAAGAATGATTCATTCACT
GTACTTTTTCAGGTTCAGAGTCAAATAATCATTTTTAACTGTTTTCTTTC
TGCATTTTTATATACAAAGATGCTTATTAATTTAAAATTCACTAAAAGAT
CTATGTATTTCCTTTTTTTGTAAATTTATCTTTTTACTTACTTTACATCC
TGTTCACTGTCCCCTCCTAGTCCCCCCTCCCACAACCCTTCTCCCACCCT
GCTCCCCTTATCCTCTAAGCAGGTGGGGACCTTGGGCATGCCCCAACCCT
GGCACTTCAAGGTCTTGAGAAGGTAGCTACTGAGGGATTGGCCTATTTTT
AATGAAAGATTTTGGTTACTGATACAATCTACATTCTAGCTTCAGATTTT
CTATTTGCTCTTGACTTACTTTTGCGTATATACATACACACAAACACATA
TATATGTATATATGTATATAATGTGTTTGTGTGTATGTAAATACGCAAAA
GTAAGTCAAGAGCAAATAGAAAATCTGAAGCTAGAATGTAGA

Query= MSMg01no136_e18.g1 MSMg01no136_e18.g1 CHROMAT_FILE:
MSMg01no136_e18.g1 PHD_FILE: MSMg01no136_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:38 2005
         (609 letters)



>mm_chr15_9354730_9355738
          Length = 1009

 Score =  882 bits (456), Expect = 0.0
 Identities = 483/494 (97%), Gaps = 6/494 (1%)
 Strand = Plus / Minus

                                                                        
Query: 68   cctatattttattttatcttctctg-aaatttaaagaatgattcattcactgtacttttt 126
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 1009 cctatattttattttatcttctctgaaaatttaaagaatgattcattcactgtatttttt 950

                                                                        
Query: 127  caggttcagagtcaaataatcatttttaactgttttctttctgcatttttatatacaaag 186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 949  caggttcagagtcaaataatcatttttaactgttttctttctgcatttttatatacaaag 890

                                                                        
Query: 187  atgcttattaatttaaaattcactaaaagatctatgtatttcctttttttgtaaatttat 246
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 889  atgcttattaatttaaaattcactaaaagatctatgtattttctttttttgtaaatttat 830

                                                                        
Query: 247  ctttttactt----actttacatcctgttcactgtcccctcctagtcccccctcccacaa 302
            ||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  ctttttacttactcactttacatcctgttcactgtcccctcctagtcccccctcccacaa 770

                                                                        
Query: 303  cccttctcccaccctgctccccttatcctctaagcaggtggggaccttgggcatgcccca 362
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 769  cccttctcccaccctgctccccttctcctctaagcaggtggggaccttgggcatgcccca 710

                                                                        
Query: 363  accctggcacttcaaggtcttgagaaggtagctactgagggattggcctatttttaatga 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  accctggcacttcaaggtcttgagaaggtagctactgagggattggcctatttttaatga 650

                                                                        
Query: 423  aagattttggttactgatacaatctacattctagcttcagattttctatttgctcttgac 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  aagattttggttactgatacaatctacattctagcttcagattttctatttgctcttgac 590

                                                                        
Query: 483  ttacttttgcgtatatacatacacacaaacacatatatatgtatatatgtatataatgtg 542
            ||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 589  ttacttttgcgtacatacatacacaaaaacacatatatatgtatatatgtatat-atgtg 531

                          
Query: 543  tttgtgtgtatgta 556
            ||||||||||||||
Sbjct: 530  tttgtgtgtatgta 517



 Score =  157 bits (81), Expect = 3e-42
 Identities = 105/113 (92%), Gaps = 1/113 (0%)
 Strand = Plus / Plus

                                                                       
Query: 497 atacatacacacaaacacatatatatgtatatatgtatataatgtgtttgtgtgtatgta 556
           |||||||||||||||||||||||||  ||||||  ||||| |||||||| ||||||||||
Sbjct: 516 atacatacacacaaacacatatatacatatatacatatat-atgtgtttttgtgtatgta 574

                                                                
Query: 557 aatacgcaaaagtaagtcaagagcaaatagaaaatctgaagctagaatgtaga 609
             |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tgtacgcaaaagtaagtcaagagcaaatagaaaatctgaagctagaatgtaga 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)