BAC Information

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BAC

Clone NameMSMg01-138G24
Chromosome15 (Build37)
Map Location 21,286,101 - 21,286,735
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138G24.T7 (MSMg01no138_g24.b1)MSMg01-138G24.TJ (MSMg01no138_g24.g1)
ACCAG344102AG344103
length704705
length of high quality
(start - end)
657 (45 - 701)634 (72 - 705)
definitionCHROMAT_FILE: MSMg01no138_g24.b1 PHD_FILE: MSMg01no138_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:28 2005CHROMAT_FILE: MSMg01no138_g24.g1 PHD_FILE: MSMg01no138_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATAATTTGCGGCGCTATACGACTCCTATATGCAGAGAATGCGCGGAA
TTCCTTGAGACCGCAATGAGGAAGGCTCTCAAGAGTTAATACAAGTGACC
TTAGCAGAAATGTCCAACAGTTGCTATATGGAACCTGAAGAGACCACTTT
CCTGTAGCCACCAACTATTTTCTAGTGGTATTAAATTAGCTAATAATGAC
AGCAAATTTCAATATAATTTTTATTTGTAATTATTTTTATTGGTCACTTT
ATTTATTTACATTTCAAATGTTATTCCCCTTCCCATTTTCCCCTCTACAA
GCCCCCATCCCCTCCTCCCTCTCCCTGACTCTAAGAGGATACTCACCACC
CTCCCACCCACTCCTGACTCAGAGGCCTAACATTCCCCTTTCCGGGGTCA
TCAAACCTCCATAGGACCAAGAGTCTCCCCTCTCAGTAATGGCAGATAAG
GTAACCCTCTGCTACATATCCAGCTGGAGCGATAGTTACCCCTGTGTGCT
CTTTGAATGGTGGTTTAGTCACTGGGAACTTGGAGGGGTCTGGTTGGTTG
ATATTGTTCTTCTTATGAGATTGCAAACCCCATCAGCTCCTATAGTCCTT
GCCCCAAATTCCACTTTAGGGGTCCCAGCACTCAGTCCAATATTTGTCTG
TGTCCATCCACATCTGTATTGGTTGAGCTCTGGCAGAGCTTCTCAGGGAA
CAGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACAGATATCCGTCTGCCTCTGCCTTCCAT
GTCATGAGATTAAAGACATGAGTCACTACCGCTTGGCACTAAAAAACACA
ATTTGAGGACCTCAAATGATATGGAGAAAAGATTATGGGTTTAGTGATTG
GAAAATGTCTACCCAGTGTTTTCTTTGCTTTTTTTTTAAACCAAGTATAG
CTACACAGAGAAATAAATATATGATTACATTTGCAGAGCAATATAATTTG
CTTTGCCATTTTTACTTTCCATGTTTCTGTATTTATATAATCAATCTATA
AAGAATTAGACTGCTATAATGATTCACTTCTCAAATCTCAGCACTTGGGC
AGTTGGCTCTGATGGGTCTTTGTCACTCTAAGGCTAGCCTGGTCTACAAA
GCAAGTTCTATACCAGCCAGGACAACACAGTGAAACCCTATCCTTTAAAA
ATAGAAAGTATGTTTTTAAAAGTTGTCATTGAGTAAAAACACAGGGTTTA
ATCTTATGATGTGTAATTTTCTGTTAAAACTGTGATACGTTATTTAATTA
GTTAGATTTTTCAATATTCAAGAAGCTATTATATTAATTTTCATATATAT
TGATTAACTAGATATTGAGTAATTTGATGCTGTTTAAAACCTATACCTCT
TTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_g24.g1 MSMg01no138_g24.g1 CHROMAT_FILE:
MSMg01no138_g24.g1 PHD_FILE: MSMg01no138_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:28 2005
         (634 letters)



>mm_chr15_21285903_21286936
          Length = 1034

 Score = 1154 bits (597), Expect = 0.0
 Identities = 625/635 (98%), Gaps = 2/635 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagatatccgtctgcctctgccttccatgtcatgagattaaagacatgagtcactaccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 199 acagatatccgtctgcctctgccttccatgtcatgagattaaagacatgagccactacca 258

                                                                       
Query: 61  cttggcactaaaaaacacaatttgaggacctcaaatgatatggagaaaagattatgggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttggcactaaaaaacacaatttgaggacctcaaatgatatggagaaaagattatgggtt 318

                                                                       
Query: 121 tagtgattggaaaatgtctacccagtgttttctttgcttttttttt--aaaccaagtata 178
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 319 tagtgattggaaaatgtctacccagtgttttctttgctttttttttttaaaccaagtata 378

                                                                       
Query: 179 gctacacagagaaataaatatatgattacatttgcagagcaatataatttgctttgccat 238
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 gctacacagagaaataaatatatgattacatttgcagaacaatataatttgctttgccat 438

                                                                       
Query: 239 ttttactttccatgtttctgtatttatataatcaatctataaagaattagactgctataa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttactttccatgtttctgtatttatataatcaatctataaagaattagactgctataa 498

                                                                       
Query: 299 tgattcacttctcaaatctcagcacttgggcagttggctctgatgggtctttgtcactct 358
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 tgattcacttctcaaatctcagcacttgggcagttggctctgatgggtctctgtcactct 558

                                                                       
Query: 359 aaggctagcctggtctacaaagcaagttctataccagccaggacaacacagtgaaaccct 418
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 559 aaggctagcctggtctacaaagcaagttctagaccagccaggacaacacagtgaaaccct 618

                                                                       
Query: 419 atcctttaaaaatagaaagtatgtttttaaaagttgtcattgagtaaaaacacagggttt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atcctttaaaaatagaaagtatgtttttaaaagttgtcattgagtaaaaacacagggttt 678

                                                                       
Query: 479 aatcttatgatgtgtaattttctgttaaaactgtgatacgttatttaattagttagattt 538
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 679 aatcttatgatgtgtaattttctgttaaaactgtgatatgttatttaattagttagattt 738

                                                                       
Query: 539 ttcaatattcaagaagctattatattaattttcatatatattgattaactagatattgag 598
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 739 ttcaatattcaagaagctattatattaattttcatatatattgataaactagatattggg 798

                                              
Query: 599 taatttgatgctgtttaaaacctatacctcttttg 633
           |||||||||||||||||||||||||||||||||||
Sbjct: 799 taatttgatgctgtttaaaacctatacctcttttg 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)