BAC Information

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BAC

Clone NameMSMg01-139G13
Chromosome15 (Build37)
Map Location 100,601,065 - 100,601,582
singlet/doubletsinglet
Overlap geneSlc4a8
Upstream geneLass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6
Downstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139G13.T7 (MSMg01no139_g13.b1)MSMg01-139G13.TJ (MSMg01no139_g13.g1)
ACCAG344820AG344821
length716713
length of high quality
(start - end)		534 (47 - 580)382 (326 - 707)
definitionCHROMAT_FILE: MSMg01no139_g13.b1 PHD_FILE: MSMg01no139_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:48 2005CHROMAT_FILE: MSMg01no139_g13.g1 PHD_FILE: MSMg01no139_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGCTGGCCAGGGCTACATACTGAGATCCTGTCTTAAACAAAG
CAAGGAGAAAGGAGCTCATGGGCAGATAGGCTAGATAAGCAAAACAGGTG
TGTTTGGTTTGTTTTTGGTTTTGTTTTTACTTAAAAATGGTTCCTTGTCA
GGTGGAGAGATGGCTTGCTGGTTAAGAGCACTGGCTACACTTGTAGAGGA
TCCTGGCTCAATTCCCAGCACCCAAAAGGCTGCTCACAACTGTCTCGTCT
CTGGTTCCAGGGGATCTAATGCCCTCTTCTGGTCTCCCTCAATCCAGGCA
CACGTGCACAGACATGTAGGCAAAACACCCTCCACACAGTTAAAAGTACA
CTTAAGAAAAAGTTCCTCAGCTGTGGTGTAACTCTCTCGCATGTGCACGG
CCCTCGGTTCAACCCCCAGTACAGCACAAGGGAAAAGGAGCAGAGATGAT
TCTTCTGTAGGAGTCTCCATACAGCCCAGCTGCAAGCAGGGCTGGTGTGC
GGGTGGTAACTTCATCAAATCGCATGCCAGCCGTGGGGTCGGCCGAGGGA
TGGCTGGAGGTTACCTGGAGGATTGCTTAGGCCAAACCAGTTGCTTCCCT
TCCTCTCCATGTCCCTTCCCCTCCCTAGGAACTTTCTGTGTAGACTCCCT
GCCTAGGGACCCACTT

TTCGATGAAGTGGTAGGCCTGGCGGCCGCCTTTTTCTCAACATGAGGTGA
ACTATAGAAGTACAGAAGAAATCTTTGAAAGAATCCTAATACAGAGCCAA
CTGCACACCCATGACCTGTAACTGTCAGGAGACACTTAGAAAGCATGTAA
GCATCCAATATAAGTACATTTAGTACTTGGATGTTTTGACCTAAAAATGT
TAAGATTCTTGGTAGGAATTCATCATCCTATTTATGGGGCTGGGAATATG
TGTCAGTCACGGAAACTCTTGCTATACAAGTGTAAGGACCTCAGTAAAAG
CTGGGTGCCGCGGCCTTGCTTATTTGTCCCAGGACTGTGAAGGCAGAGAC
AGGTGGCTCACCGGAGCTCATTCACCAACCAGTCTAACCAACAGGGGAGT
ACAGTTTTAGTGAGAGAACCTGCGTCAAAAAGTAAGGTGGGGCCAGATAC
GAGCCTCAGTGAGCAAAGGCACTTCTTGCCAAGCTTAATGACTTAAGTTC
AGTAACGGGGACCCACACAACGGAAGCCTGGAACAGACTCCCTCCAAGTT
GTCTCTGACCTTCACATACATGCTGAAGCACATGAACACGCACACACAAA
ACAGATAATTAAAAAAAAAACTGAGATTAAAAAGGTGAAAAAAAATGAGA
GGAATAAAGCAATGAGGAACTTTGGCCTTTAAACACCTGTGTGCATGTGC
GTGACGTGGTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_g13.b1 MSMg01no139_g13.b1 CHROMAT_FILE:
MSMg01no139_g13.b1 PHD_FILE: MSMg01no139_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:48 2005
         (534 letters)



>mm_chr15_100600862_100601792
          Length = 931

 Score =  899 bits (465), Expect = 0.0
 Identities = 506/521 (97%), Gaps = 4/521 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggctggccagggctacatactgagatcctgtcttaaacaaagcaaggagaaa 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccaggccggtcagggctacatactgagatcctgtcttaaacaaagcaaggagaaa 263

                                                                       
Query: 65  ggagctcatgggcagataggctagataagcaaaacaggtgtgtttggtttgtttttggtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggagctcatgggcagataggctagataagcaaaacaggtgtgtttggtttgtttttggtt 323

                                                                       
Query: 125 ttgtttttacttaaaaatggttccttgtcaggtggagagatggcttgctggttaagagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgtttttacttaaaaatggttccttgtcaggtggagagatggcttgctggttaagagca 383

                                                                       
Query: 185 ctggctacacttgtagaggatcctggctcaattcccagcacccaaaaggctgctcacaac 244
           |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 384 ctggctacacttttagaggaccctggctcgattcccagcacccaaaaggctgctcacaac 443

                                                                       
Query: 245 tgtctcgtctctggttccaggggatctaatgccctcttctggtctccctcaat-ccaggc 303
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 444 tgtctcgtctctggttccaggggatctaatgccctcttctggtctcccccaataccaggc 503

                                                                       
Query: 304 acacgtgcacagacatgtaggcaaaacaccctccacacagttaaaagtacacttaagaaa 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 acacgtgcacagacatgtaggcaaaacaccctccacacagttaaaagtacacgtaagaaa 563

                                                                       
Query: 364 aagttcctcagctgtggtgtaactctctcgcatgtgcacggccctcggttcaacccccag 423
           |||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 564 aagttcctcaactgtggtgtaactctgtcgcatgtgcaaggccctcggttcaacccccag 623

                                                                       
Query: 424 tacagcacaagggaaaaggagcagagatgattcttctgtaggagtctccatacagcccag 483
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 624 tacagcacaagggaaaaggagcagagatgattct---gtaggagtctccatacagcccag 680

                                                    
Query: 484 ctgcaagcagggctggtgtgcgggtggtaacttcatcaaat 524
           ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 ctgcaagcagggctggtgtgcgggtgggaacttcatcaaat 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 931
Length adjustment: 10
Effective length of query: 524
Effective length of database: 921
Effective search space:   482604
Effective search space used:   482604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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