Query= MSMg01no140_m17.b1 MSMg01no140_m17.b1 CHROMAT_FILE:
MSMg01no140_m17.b1 PHD_FILE: MSMg01no140_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:38 2005
(560 letters)
>mm_chr15_80294932_80295891
Length = 960
Score = 986 bits (510), Expect = 0.0
Identities = 537/546 (98%), Gaps = 2/546 (0%)
Strand = Plus / Minus
Query: 5 gaattctccttttgc-ctgtgtgggtcccagggataggactcagctcatcgggcttggca 63
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 545 gaattctccttttgcactgtgtgggtcccagggataggactcagctcatcgagcttggca 486
Query: 64 gcgggtaccttacccactgagccatctcaacagcccagagagccctgacagaagagacac 123
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 -caggtaccttgcccactgagccatctcaacagcccagagagccctgacagaagagacac 427
Query: 124 tgaatttgatataaagaacgatggcagatttctcagtgctggggagactggagactaaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgaatttgatataaagaacgatggcagatttctcagtgctggggagactggagactaaac 367
Query: 184 caagccctttaaatctcaccaggaaacctaaagaaggctcctaataggctggaagcattt 243
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 366 caagccctttaaacctcaccaggaaacctaaagaaggctcctaataggctggaagcactt 307
Query: 244 ctgtgacagcgctggctccagagccagaccgtctgggtttatgatcccagtttccctgcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctgtgacagcgctggctccagagccagaccgtctgggtttatgatcccagtttccctgcc 247
Query: 304 tctcacagtatagtaactgagtgagacactcggcctctctgtggggcagataataatggc 363
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tctcacagtatagtaactgagcgagacactcggcctctctgtggggcagataataatggc 187
Query: 364 tctgctacatggagttcataaaagccacgccttctgtgggggacttgatactcagacgtg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tctgctacatggagttcataaaagccacgccttctgtgggggacttgatactcagacgtg 127
Query: 424 cagtctctgctcctgctgctcagatgcacatgtgcttagagctgcacgcccgcagtgggc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 cagtctctgctcctgctgctcagatgcacatgtgcttagagctgcacgcccgcagtgggc 67
Query: 484 tcttcaccctcaggatctctctgttggtgtccttctcatgccttctcagacgatacacag 543
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tcctcaccctcaggatctctctgttggtgtccttctcatgccttctcagacgatacacag 7
Query: 544 atacac 549
||||||
Sbjct: 6 atacac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_m17.g1 MSMg01no140_m17.g1 CHROMAT_FILE:
MSMg01no140_m17.g1 PHD_FILE: MSMg01no140_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:38 2005
(248 letters)
>mm_chr15_80160997_80161644
Length = 648
Score = 429 bits (222), Expect = e-125
Identities = 241/248 (97%), Gaps = 4/248 (1%)
Strand = Plus / Plus
Query: 1 aattcatttccactgactgtctcgctcaaggtcactgggtgtcctgggtggtggtggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcatttccactgactgtctcgctcaaggtcactgggtgtcctgggtggtggtggtga 260
Query: 61 gctgggattggaacccaggaatgtgctctgaccattggaccacacagcccacagggatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgggattggaacccaggaatgtgctctgaccattggaccacacagcccacagggatgc 320
Query: 121 tggccacctcccacctgctgtagtgtgttgtggtcactgagccagttg--cggggggggg 178
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 321 tggccacctcccacctgctgtagtgggttgtggtcactgagccagttgggcggggggggg 380
Query: 179 ggggaagctcaagagctgtgatgagatggggtcgggggtaggttcttccacacctggtgc 238
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 381 gggga-gctcaagagctgtgatgagatggggtcgggg-taggttcttccacacctggcgt 438
Query: 239 gccctttg 246
||||||||
Sbjct: 439 gccctttg 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
