Query= MSMg01no140_p16.b1 MSMg01no140_p16.b1 CHROMAT_FILE:
MSMg01no140_p16.b1 PHD_FILE: MSMg01no140_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:53 2005
(539 letters)
>mm_chr15_64168628_64169566
Length = 939
Score = 951 bits (492), Expect = 0.0
Identities = 521/536 (97%), Gaps = 9/536 (1%)
Strand = Plus / Minus
Query: 1 ttgatttggtgcagttattaagaatatttgaaattaccttctggctgtgttgatgaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ttgatttggtgcagttattaagaatatttgaaattaccttctggctgtgttgatgaagtg 819
Query: 61 ttgatgaaacataaatgcgtttcgtgtttagacttgagtctattccccaagagacttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ttgatgaaacataaatgcgtttcgtgtttagacttgagtctattccccaagagacttccc 759
Query: 121 tacgtatatgcaaatatcaaaatcaagaaaatttgaaaattcaagcaaatctggccccga 180
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 758 taagtatatgcaaatatcaaaatcaagaaaatttgaaaatttaagcaaatctggccccga 699
Query: 181 gcatttcaga---------tccacaggtcacgtccaccatggctggctcttcttgtttcc 231
|||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gcatttcagataagggatctccacaggtcacgtccaccatggctggctcttcttgtttcc 639
Query: 232 acatgacatggagttatgtgctatgttgtatcctgcccctttgctgcccggacccacacc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 acatgacatggagttatgtgctatgttgtatcctgcccctttgctgcccggacccacacc 579
Query: 292 ctacccttgccctgcttctaaacatactcactggcctctgccttcctcacaagtgctgtc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctacccttgccctgcttctaaacatactcactggcctctgccttcctcacaagtgctgtc 519
Query: 352 ctatctggattctgcttcgtgttgttcttctgtcttccaggcccctgacactaggatcct 411
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 518 ctatctggattctgcttcgtgttgttcttctgtcttccaggcccctgacaccaggatcct 459
Query: 412 ggtattcagatccccacatcttagatgaattgaaagccccttagacagctctttacctcc 471
|||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 458 ggtatttagatccccacatcttagctgaattgaaagcccctcagacagctctttacctcc 399
Query: 472 tctgtaacctctctctctctctctctctctctctctctctctctctctctctctct 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tctgtaacctctctctctctctctctctctctctctctctctctctctctctctct 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_p16.g1 MSMg01no140_p16.g1 CHROMAT_FILE:
MSMg01no140_p16.g1 PHD_FILE: MSMg01no140_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:53 2005
(550 letters)
>mm_chr15_64024771_64025721
Length = 951
Score = 957 bits (495), Expect = 0.0
Identities = 536/555 (96%), Gaps = 11/555 (1%)
Strand = Plus / Plus
Query: 2 ttaagccctctgaaatttcttaggctgtttattcccagctattcaacaatggaatg---- 57
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttaagtcctctgaaatttcttaggctgtttattcccagctattcaacaatggaatgcttt 261
Query: 58 -cttcaaaccttcttcaataac-gtacaagagcaatggcctttcaagaaatgaaacagca 115
||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct: 262 acttcaaaccttcttcaataactgtataagagcaatggccgttcaagaaatgaaacagca 321
Query: 116 gcccggggaataacgggcaagaaacattgctgtcatccagtgagaccagatgaagctccc 175
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 322 gcctggggaataacgggcaagaaacatcgctgtcatccagtgagaccagatgaagctccc 381
Query: 176 aaagacttctgctcatcacagcattaaaattcatgatgcctgcagtggcgataaacattt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaagacttctgctcatcacagcattaaaattcatgatgcctgcagtggcgataaacattt 441
Query: 236 atgactgtgatatttttaaaagataaaacacatctctggttaagcctcagaaaaatagaa 295
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atgactgcgatatttttaaaagataaaacacatctctggttaagcctcagaaaaatagaa 501
Query: 296 agaccatctcagctcaacaataggccgtgcacgtctgccccaaagcatagatctacctgg 355
||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 502 agaccatctcagctcaacaataggc-----acatctgccccaaagcatagatctacctgg 556
Query: 356 gtcatagacgcccacaccccactgagactcccacctaatgcttctgcttctgcaagccag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtcatagacgcccacaccccactgagactcccacctaatgcttctgcttctgcaagccag 616
Query: 416 tgagaaacaatgaagtccgtttcaacgctccaggggagaaagcacctcagcattaggtgg 475
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgagaaacaatgaagtccatttcaacgctccaggggagaaagcacctcagcattaggtgg 676
Query: 476 gatacactggcacacaggcttgctctttgttcccttgaagtcatagaatgaaatgtgtag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gatacactggcacacaggcttgctctttgttcccttgaagtcatagaatgaaatgtgtag 736
Query: 536 agatgtgtaaattat 550
|||||||||||||||
Sbjct: 737 agatgtgtaaattat 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
