BAC Information

Click to search

BAC

Clone NameMSMg01-144G06
Chromosome15 (Build37)
Map Location 34,544,664 - 34,544,935
singlet/doubletsinglet
Overlap geneNpal2
Upstream geneTspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1
Downstream geneKcns2, Stk3, Osr2, Vps13b, EG666183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144G06.T7 (MSMg01no144_g06.b1)MSMg01-144G06.TJ (MSMg01no144_g06.g1)
ACCAG348473AG348474
length724739
length of high quality
(start - end)
276 (46 - 321)313 (74 - 386)
definitionCHROMAT_FILE: MSMg01no144_g06.b1 PHD_FILE: MSMg01no144_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:12 2005CHROMAT_FILE: MSMg01no144_g06.g1 PHD_FILE: MSMg01no144_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCAAATTCCTACCGCCCATATAATGAGCTGGGTGTGGCTGTATCACAA
AGCAGACTTGGTAGCCAGAAAATCTAGTTTCAGGCTATTTTAACCCTAAA
TTTCCTTTAGGAGAGTATTTCCCAATGGGTGTTCCTTAGAACAAGTTTAA
AGAGATTTATGCCCCACCAATAAACATTTCTAAGACATCAAATATATTTG
GGAAGAGGTGAGATAACTGGAGTAGATCTTTTTCTGGGAGACTGCTCAGG
TGACCAATATGTTGACATTATTTATGAATCACCCAGAAGACAACAAAGTT
GTCTTACTTTCTAACCGTATTTGACCACTTATATTGCTCTGAAGCAGTAG
TATTTTGAGGAGTGCCCCATACTTGGGAAATGCTTGACATTTATGGGCTT
GATGTGAAAACGCAGCCTTGGTCTCAGGAGGCTACTGTCTGCCACATGCC
TTCCGGAGATTCTTAGGGATGAAGCACTGTGCCTGGAATCAGACCGACTT
GTTTGCTGCCTCCTCTATCCATCACGTTAAGATGGATATATGTAGTTCTT
CAGCTGATGTTCTGCTTACCAGATTACTATCCATCTAATCCCCATTCTAA
CCTTTAGTTTTGTAACTCCCAGGATTTGTCTTGCCCTGCCTTCAGACAGT
CTTCAGTCTTATAACTTTTTGTTC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTA
ATGGGGTTATTCGATTTTCTGGAGTCCATCTTCTTGACTTCTTTGTATTA
AGGAAAAGTAATTGTTTCTTCCTGTTATTTTTGTTGTTAGAGTTGGAATT
CTGTTCTTGTGGCTATCTATTTTTAGGTTTGTTGAAGGATTACTTTCTTG
CTTTTTCTAGGGCATAATTTCCCTCCTTGTGTTGGAGTTTTCCCTTTATT
ATCCCTTGAAGGGCTGGATTCATGTAAAGATATTTGTGAATTTGGTTTTA
TCATGGAATACTTTGGCTTCTCCATCTATGGTAATTGAGAGTTTTGCTCG
GTATATTATCCTGCCCCCGCCCTTTGCGGTCTCTTAGTTTCTGCATAATA
TCTGCCCCGCACCTTCTGGCTTTCACAATCTCTGGAGAGAAGCCTGTTTG
TAATTCTGATAGATCCGCCTTTATATGTTACTCGACTTTTTCTCCCTACT
TCCTTTAATACTCTGTCCCGATTTTATTCCTTTGTCGCTCTGATTAATAT
TGTGTCGTGGGCGCCCACTCTCCCTCTTACCTTTTCCTTTTATCCTTTTT
TCCTTTTTTCCCCTTTTTTTGTCCTTTTTTTTTTTCCCTCTCTCCATCCT
CCCAATTCTATTTTTTTCTTTTTTCCCCTCCTCTTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_g06.b1 MSMg01no144_g06.b1 CHROMAT_FILE:
MSMg01no144_g06.b1 PHD_FILE: MSMg01no144_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:12 2005
         (276 letters)



>mm_chr15_34544461_34545136
          Length = 676

 Score =  511 bits (264), Expect = e-149
 Identities = 270/272 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcaaattcctaccgcccatataatgagctgggtgtggctgtatcacaaagcagact 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaaattcctagtgcccatataatgagctgggtgtggctgtatcacaaagcagact 263

                                                                       
Query: 64  tggtagccagaaaatctagtttcaggctattttaaccctaaatttcctttaggagagtat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggtagccagaaaatctagtttcaggctattttaaccctaaatttcctttaggagagtat 323

                                                                       
Query: 124 ttcccaatgggtgttccttagaacaagtttaaagagatttatgccccaccaataaacatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttcccaatgggtgttccttagaacaagtttaaagagatttatgccccaccaataaacatt 383

                                                                       
Query: 184 tctaagacatcaaatatatttgggaagaggtgagataactggagtagatctttttctggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctaagacatcaaatatatttgggaagaggtgagataactggagtagatctttttctggg 443

                                           
Query: 244 agactgctcaggtgaccaatatgttgacatta 275
           ||||||||||||||||||||||||||||||||
Sbjct: 444 agactgctcaggtgaccaatatgttgacatta 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)