BAC Information

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BAC

Clone NameMSMg01-144M06
Chromosome15 (Build37)
Map Location 21,528,285 - 21,528,651
singlet/doubletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302, Cdh12
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144M06.T7 (MSMg01no144_m06.b1)MSMg01-144M06.TJ (MSMg01no144_m06.g1)
ACCAG348745AG348746
length726862
length of high quality
(start - end)
374 (43 - 416)100 (76 - 175)
definitionCHROMAT_FILE: MSMg01no144_m06.b1 PHD_FILE: MSMg01no144_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:41 2005CHROMAT_FILE: MSMg01no144_m06.g1 PHD_FILE: MSMg01no144_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGG
AATTCCTATTCATTACCTTGGATTTTTAAAGATTAAAATATAATTGAAAT
GACCCATTTGCTTCCATGTTCAGAATTTTGTGATTTAAAAGAAATATTGT
CCCAATTTTTCTTAATTTTTCTTTATTTCCAATTAGTATGTATGACATAC
TTATCATATTTTAAAACCTAATAGTATTTTTAACTGACCAATTATGAATA
TCACAACACTGTAGGACAGGAAAATGCGTCACAGATTTTCATGGTATTTT
CATCCATTTTCATGGAAGTCAATGATCAGTCTGGCTTTGATACTACCAAT
TACAAAACGTATTACCAACCCAGCTAATTCAATTAGAAAAACACAAAGTC
CTAAAAAGAAATTATCCACCCACTTAATTTTCCTTATTCTGGAAATGGTC
TTATCATATGACATTAGTTATATTTAAAGCTTTGTTATAAATACAGTGCT
CCCAGCAGACATGTTATTCTTATTGGTGAAATGCAACTGATTACAAAGCT
ATTATTTCAGCATATATCCGAGTATATTTATCTCATGCGTGGGTTGGTTA
AAGTCTTTCCTGATTCGGACCCATTATGTTTACAGCATATAGCGCGTATA
CAGAGTTTCTTACTGTATCCACACTTATCTTGACTGTCCTTCCGTCCTCC
GAATGATTTCCCTGTCCTATTTCTTC
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGAATAGCTGTGTTCTTCATTTT
TTTAATAGTCATATTTGATTCTCTGGAGTCTTCTTGAATACTTCATATAT
ATGTGTGTGTGTGTGTGTGTGCGTGAGAGATAGATATTCCTATTCTTTTT
TTCCTTCTCTCTTTCCTCCTTCTTTCCTCTCTTTTTTTTTCCCCCTTTTT
TCCCCCCTTTCTTCCTCTTTTTTCCTTTTTCTTTCTTTTTTCCCCCCCCC
CCTTTTTCTCCCCCCCCCTCTCCTTTCTTTTTTTTTTTCCTTCATCTCCT
TCTCTTTCCTTTTCTCCCTCTTTTTTCTTTCCCTTCTCTTTCTTCTTCTT
TCCTTCTTCCCTTTCCTTTTCTCTTCTTCTTTTTTTCTCCCCCCCCCCCT
GTTTCCTCTTTTTTCCCCTCTTTTCCTCCCTTTTTTTTCTCCCCCCCCGC
CCCTTTCTTTTTTTTTCCCACCCCATTTCTTCTCCCTCTTCTTTACCCCC
AATTTTTTTCTCTCCCTCCTCTTTTTTCCCCCTTTCCATTTCCCCTTTTT
TTCACTTCTTTTTTTTCTTTCCTCTTTTTTTTCCTTTTTCTTCTCTTTTT
TCTCCCCCATTTTTACACTTCCCCTCTTTCCCCCCTCTTTTTTTCCCTTT
CTATTCTCATTTCTTCCTCTTCTCTCTCCCTCATTTCCCCTTTTCTTTAT
CCCCCTTCTCTTCCTTTTTTTTCCCCCCTCTTTCTCTCTCCTTTTTTTTT
TTCTCCCTTCTTTCTCTTCCTCCCCCTTCTTTCTTTTTTCTTTTTTCCCC
TCCTCTATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_m06.b1 MSMg01no144_m06.b1 CHROMAT_FILE:
MSMg01no144_m06.b1 PHD_FILE: MSMg01no144_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:41 2005
         (374 letters)



>mm_chr15_21528078_21528851
          Length = 774

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/368 (97%), Gaps = 2/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcctattcattaccttggatttttaaagattaaaatataattgaaatgacccattt 67
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctattcattaaattggatttttaaagattaaaatataattgaaatgacccattt 267

                                                                       
Query: 68  gcttccatgttcagaattttgtgatttaaaagaaatattgtcccaatttttcttaatttt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcttccatgttcagaattttgtgatttaaaagaaatattgtcccaatttttcttaatttt 327

                                                                       
Query: 128 tctttatttccaattagtatgtatgacatacttatcatattttaaaacctaatagtattt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tctttatttccaattagtatgtatgacatacttatcatattttaaaacctaatagtattt 387

                                                                       
Query: 188 ttaactgaccaattatgaatatcacaacactgtaggacaggaaaatgcgtcacagatttt 247
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttaactgaccagttatgaatatcacaacactgtaggacaggaaaatgcgtcacagatttt 447

                                                                       
Query: 248 catggtattttcatccattttcatggaagtcaatgatcagtct-ggctttgatactacca 306
           ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct: 448 catggtattttcatccattttcatggaagtcaatgatcagt-tcggctttgatactacaa 506

                                                                       
Query: 307 attacaaaacgtattaccaacccagctaattcaattagaaaaacacaaagtcctaaaaag 366
           |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 attacaaaacatattaacaacccagctaattcaattagaaaaacacaaagtcctaaaaag 566

                   
Query: 367 aaattatc 374
           ||||||||
Sbjct: 567 aaattatc 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)