Query= MSMg01no146_b12.b1 MSMg01no146_b12.b1 CHROMAT_FILE:
MSMg01no146_b12.b1 PHD_FILE: MSMg01no146_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:27 2005
(439 letters)
>mm_chr15_51160147_51160987
Length = 841
Score = 772 bits (399), Expect = 0.0
Identities = 429/445 (96%), Gaps = 14/445 (3%)
Strand = Plus / Minus
Query: 1 cctatctcaacttctcttcaagttcacct--tttaaataacttccccc----tgattaaa 54
|||||||||||||||||||||||||| | |||||||||||| | ||||||||
Sbjct: 639 cctatctcaacttctcttcaagttca--taatttaaataactt----ctttttgattaaa 586
Query: 55 attgtcaacgtagactatttgacaccatgaaaaaggagcaaatcag--aaaaaaaatctg 112
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 585 attgtcaacgtagactatttgacaccatgaaaaaggagcaaatcagaaaaaaaaaatctg 526
Query: 113 tttattgtcttagtactcagccatacttctgctggcacttttgttcttatatttctctga 172
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tttattatcttagtactcagccatacttctgctggcacttttgttcttatatttctctga 466
Query: 173 ttttactcccaacccaaacatgtatgacaagtatgaaataacatggaacagtttccccag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttttactcccaacccaaacatgtatgacaagtatgaaataacatggaacagtttccccag 406
Query: 233 cagaagcttcccaggagaaaggcagtcaaaaggacagcatgattaataggtgagaggtta 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cagaagcttcccaggagaaaggcagtcaaaaggacagcatgattaataggtgagaggtta 346
Query: 293 ccaagaggccttagagctaaaatattttcatttgatggccatagcagcctaagagacagg 352
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccaagaggccttagagctaaaaaattttcatttgatggccatagcagcctaagagacagg 286
Query: 353 atagaatcatcaaagtctcaccagaatctcatgtatcaaggtgagagagggaaatgggtg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atagaatcatcaaagtctcaccagaatctcatgtatcaaggtgagagagggaaatgggtg 226
Query: 413 gaatagagaggtagattggggggtg 437
|||||||||||||||||||||||||
Sbjct: 225 gaatagagaggtagattggggggtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 841
Length adjustment: 9
Effective length of query: 430
Effective length of database: 832
Effective search space: 357760
Effective search space used: 357760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_b12.g1 MSMg01no146_b12.g1 CHROMAT_FILE:
MSMg01no146_b12.g1 PHD_FILE: MSMg01no146_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:28 2005
(720 letters)
>mm_chr15_51030060_51031179
Length = 1120
Score = 1353 bits (700), Expect = 0.0
Identities = 715/720 (99%)
Strand = Plus / Plus
Query: 1 ttgcccccaagaaaaagaggacacttaagacgtagaacaggatgaccccactgacattca 60
|||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct: 201 ttgcccccaagaaaaagaggacacttaagatgcagaacaggatgacttcactgacattca 260
Query: 61 aagcttgttattattagcccagattttaaaaacaaattcagcatctttagaatttgtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcttgttattattagcccagattttaaaaacaaattcagcatctttagaatttgtcat 320
Query: 121 atcgaagttgcaatacactttgttctgcagggcaatacaagcgtttatcgagtttgagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcgaagttgcaatacactttgttctgcagggcaatacaagcgtttatcgagtttgagtt 380
Query: 181 gtttgtgtctataacatgcagtgaaaatctgaactctgctctcttttcagagcatggcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgtgtctataacatgcagtgaaaatctgaactctgctctcttttcagagcatggcta 440
Query: 241 ccaagtgtcccctgcataagtccacatgtttggaaaggaacagtgatatatttgagctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagtgtcccctgcataagtccacatgtttggaaaggaacagtgatatatttgagctca 500
Query: 301 gagctcctggacagggttttaacaacaggaaggcttgtgtggcaaaaaaggctgctgcga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagctcctggacagggttttaacaacaggaaggcttgtgtggcaaaaaaggctgctgcga 560
Query: 361 aggatgctttctgatgattctctgcctgtgccaagatggggaagctaaatcacagccctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggatgctttctgatgattctctgcctgtgccaagatggggaagctaaatcacagccctt 620
Query: 421 gtgggcgtattgtaccaggcactaccgtgatcatcaccccatctacctcctgtttaacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgggcgtattgtaccaggcactaccgtgatcatcaccccatctacctcctgtttaacat 680
Query: 481 gtgttatgtgctatgttgttgacagagccaactaacatatttatttcaatggagctatac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgttatgtgctatgttgttgacagagccaactaacatatttatttcaatggagctatac 740
Query: 541 agttattccattttttgaaaggaaaagaataacttaaccaaaaattgatttcaaatgttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agttattccattttttgaaaggaaaagaataacttaaccaaaaattgatttcaaatgttg 800
Query: 601 ttacctgagaaatgttaatatcctttgtagtatactaatctatcacctgacttattggtg 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 801 ttacctgagaaatgttaatatcctttgtagtatactaatctatcacttgacttattggtg 860
Query: 661 gagagggggtgaactttctgttcactgaacagactttatcgagatgctttcttctggata 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gagagggggtgaactttctgttcactgaacagactttatcgagatgctttcttctggata 920
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space: 788100
Effective search space used: 788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
