BAC Information

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BAC

Clone NameMSMg01-146D24
Chromosome15 (Build37)
Map Location 16,989,855 - 16,990,563
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040087, LOC624183, LOC100040119, Cdh9
Downstream geneLOC100040162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146D24.T7 (MSMg01no146_d24.b1)MSMg01-146D24.TJ (MSMg01no146_d24.g1)
ACCAG349839AG349840
length1,1601,127
length of high quality
(start - end)
784 (94 - 877)711 (124 - 834)
definitionCHROMAT_FILE: MSMg01no146_d24.b1 PHD_FILE: MSMg01no146_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:48 2005CHROMAT_FILE: MSMg01no146_d24.g1 PHD_FILE: MSMg01no146_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCACCCTGTGNNNNAGCAGTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTCACCTGAGAAATACCCAATAAAGAGACAAGCACCTG
AAAAAATGTTCAACATCCTTCATCATCAGGAAAATGCCCCCCAAAACAAC
CTTGAGATTCCACCTCACACCAGTCAGAATGGCTAAAGTCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCG
GTTCCTCAGAAAATTGGACATGGTAATACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCTAGAAGATGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCATTCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AATACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCCAA
TGGATGGACCTGGGGGTATCATCCTGAGTGAGGTAACACATTCACAAAGG
AACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTA
GGATACCCAAGATATAAGATACAATTTGCTAAACACCTGAAACTCAAGAA
AAATGAAGACTGAAGTCTGGACACTATGCCCCTCCTTAGAAGTGGGAACA
AAACACCCACGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACGAAA
GGATGGACCATGTAGAGACTGCCATATCCAGGGATCCTCCCCATAATCAG
CATCCAAACGCCAACACCATTACATACACTAGCAAGATTTTATCGAAAGG
ACCCAGATGTAGCTGTCTCTTTTGAGACTATGCTGGGGCCTAGCAAACAC
AGAAGTGGATGCTCACAGTCAGCTTAGGTATGGATCACAGGCTCTCCCAT
GGAGGAACTTACGAAAGTACCCAAGGGACTTAAAGGAATCTGAAAACCCT
ATTAGGTGGAACAACATTTATAAATTAACCCGTAACCCCGGAAATTCTTG
TTCTCCAACTGTGCAAAGGTTCCAAAAAAAGGGCCATAAATCCGCCATTT
AATGGAGAAA
CATTCTCTTNNNAAAAGATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTTTATTTTGTTTTGTTT
TTATTTCATTTCAGTCCATTTTAGTTCAGTTCACCTTACTTTTGTGTTGA
TTTTGGTCATGAAGGACACATAACTTAAATGTTAATCTTATATAAATTTA
GGTTTGTTTTTGAAATATATAAAGAAGAAGATAATAGTTAACAGTCATCT
GCAAGCAATATGATTAATAGTTAATAGTTAATATTAATAGTTCATAATTA
CGTCTGCAAGCAATATTATTAGCATAAAATATTCTATATTTTAAAAGCTA
TCACCACATTTTTTCTTTGATTTTCTATTTATGAGACCACAGTTTTGATT
CTCTACCTCTGTATAAAGTCTTAGGAAGATGTTTTCTGTAATGTGATTCA
GTTAATCAGACACCATGAAAGAACTATCCAGGTGCTCAGTGGTAATTAGT
TATGTGCTCTTTCCATAGAAAACTTCATTCAATGTCTCTCTTTCACTCTT
CAGTTTCTCTTGGTTAGAAAAATTCAAAACGTAATCTGCTCTAATGCCTT
AAATGTAATCATCTATGTCTGACTTTGTCCCTTCTTAAATAACTCTTAGA
TGTTAACCCACTACTTCTGGACAATTATATATAACCTCAGTAAACAATTC
TTGGTCAAACAATTCTTGAGGTACTGCTTTTTATAAAGCTTACTTTAAAA
ATTTACTATTTGACTTATTGTTACATTATATTACATTCATTTAATTCTCT
GTAATATAGGTTTTCATTTTTGTTTACCTTTACATATATTGCACTATGAA
TAACAAATTTCAAAAGATTTTAGACCCATTAATTTTATATAAAGACAGCA
TCATATGAGACAGTACACCATGAATTTTCCAAAATGAATGAAAATGGTGG
TCAGAACCATCAGTCTCTAAAAACTCAAAATAAAGTACAGTTTTACCTTC
TATAGGCTTATTTCCCCCCGGAACCAAAAAAAAATTTGAAATGGAATTGA
AATATATGGCCTTTTTTTCTTGGAAAAACCTTTTTTCAAGAATTTGGGAA
ATTTTAACCCTTTCAAATTTTATCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_d24.g1 MSMg01no146_d24.g1 CHROMAT_FILE:
MSMg01no146_d24.g1 PHD_FILE: MSMg01no146_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:48 2005
         (711 letters)



>mm_chr15_16989655_16990765
          Length = 1111

 Score = 1317 bits (681), Expect = 0.0
 Identities = 702/709 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcagttcaccttacttttgtgttgattttggtcatgaaggacacataacttaaatgtt 60
           |||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 909 gttcagtttactttacttttgttttgattttggtcatgaaggacacataacttaaatgtt 850

                                                                       
Query: 61  aatcttatataaatttaggtttgtttttgaaatatataaagaagaagataatagttaaca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 849 aatcttatataaatttaggtttgtttttgaaacatataaagaagaagataatagttaaca 790

                                                                       
Query: 121 gtcatctgcaagcaatatgattaatagttaatagttaatattaatagttcataattacgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 789 gtcatctgcaagcaatatgattaatagttaatagttaatattaatagttcataattacat 730

                                                                       
Query: 181 ctgcaagcaatattattagcataaaatattctatattttaaaagctatcaccacattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ctgcaagcaatattattagcataaaatattctatattttaaaagctatcaccacattttt 670

                                                                       
Query: 241 tctttgattttctatttatgagaccacagttttgattctctacctctgtataaagtctta 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 669 tctttgattttctatttatgagaccacagttttgattccctacctctgtataaagtctta 610

                                                                       
Query: 301 ggaagatgttttctgtaatgtgattcagttaatcagacaccatgaaagaactatccaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggaagatgttttctgtaatgtgattcagttaatcagacaccatgaaagaactatccaggt 550

                                                                       
Query: 361 gctcagtggtaattagttatgtgctctttccatagaaaacttcattcaatgtctctcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gctcagtggtaattagttatgtgctctttccatagaaaacttcattcaatgtctctcttt 490

                                                                       
Query: 421 cactcttcagtttctcttggttagaaaaattcaaaacgtaatctgctctaatgccttaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cactcttcagtttctcttggttagaaaaattcaaaacgtaatctgctctaatgccttaaa 430

                                                                       
Query: 481 tgtaatcatctatgtctgactttgtcccttcttaaataactcttagatgttaacccacta 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgtaatcatctatgtctggctttgtcccttcttaaataactcttagatgttaacccacta 370

                                                                       
Query: 541 cttctggacaattatatataacctcagtaaacaattcttggtcaaacaattcttgaggta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cttctggacaattatatataacctcagtaaacaattcttggtcaaacaattcttgaggta 310

                                                                       
Query: 601 ctgctttttataaagcttactttaaaaatttactatttgacttattgttacattatatta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctgctttttataaagcttactttaaaaatttactatttgacttattgttacattatatta 250

                                                            
Query: 661 cattcatttaattctctgtaatataggttttcatttttgtttaccttta 709
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cattcatttaattctctgtaatataggttttcatttttgtttaccttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)