BAC Information

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BAC

Clone NameMSMg01-146I02
Chromosome15 (Build37)
Map Location 21,876,995 - 21,877,507
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146I02.T7 (MSMg01no146_i02.b1)MSMg01-146I02.TJ (MSMg01no146_i02.g1)
ACCAG350026AG350027
length1,3031,191
length of high quality
(start - end)		770 (194 - 963)518 (79 - 596)
definitionCHROMAT_FILE: MSMg01no146_i02.b1 PHD_FILE: MSMg01no146_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:21 2005CHROMAT_FILE: MSMg01no146_i02.g1 PHD_FILE: MSMg01no146_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTAGGGNNNNNNNTTAAATCTGACTAAGAGAGATACNNNTTTAGACANN
NNNNNTTAATAATAATATGTATAATATNNNTTAGTTTTTATTTCTTTTNN
NNNCCCGAATTTATAGNGTAACATGTGGCGCNATAGACTCCTAAGGGAGA
GGATCCGCGGAATTCAGGCCTATACCTAAACCTTTTAAAGGCAATCTACA
GCAAACCACTAGCCAACATCACCCTAAATGGTGAGAAGCTGCCCGCAATC
CCACTAAAATCATGGACTAGACATGGCTGTCCACTCTCTCCCTACCTATT
CAACATTGTACTTGAGTCCTAGCCAGAGCAATTAGACAACAAAAGAAGAT
CAAGGGGATACAAACAGGAAAGGAAGAAGTCAAAATATCACTTTTTGCAG
ATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTC
CTAAGCCTGATAAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTC
AAACAAGTCAATGGTCTTTCTGTACACAAAGGATAAACAGGCTGAGAAAG
AAATTAGGGAAACAACACCCTTCTCAATAGTCATAAATAATATAAAATAC
CTTGGCATGACTCTAACTAAGGAAGTGAAAGATCTTTATGATAAGAACTT
CAAGTCTCTGAAGAAAGAAATAAAAGAAGATCTCAGAAGATGGAAAGATC
TCCCATGCTCATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTG
CCAAAAGCAATCTACAGATTCAATGCAATCCCCTTCAAAATTCCAACTCA
ATTCTTAAACGAATTAGAAAAGACAATCATTAGATTCATCTGGAATAACA
AAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAAACCTCTGGTG
GAATCACCATGCCTGACCTAAAGCTGTACTACAGAGCAATTGTGATAAAA
ACTGCATGGTACTGGTATAGTGACAGACAAGTAGACCATTGGAACAGAAT
TGAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATTTTTGACA
AGGGAGCTAAAACCGTCCAGTGTAAAAAAAGACAGCATTTTTCACAAATG
GTGCTGGCACCAACTGGTTGTTATCTTGTAAAAAAAATTCTAATTGGATC
CGTTTCCTATTCCCCTGGAACTAAAGGGTCATAACCTAAGGGGGATTTAA
GGGAACTCCCCCTTTAAAACCGAAAGACACTGTGAATTCTTTAGAGAAAA
AAAAAAACGCAAAAGGGCTCTCTAAAAAATATGGGTTACACGGGAAATAA
ATC

NCCCTTTTTTATNTTTAACATGGNAGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTAGATCTTTCCAATCTT
TTATCATGAATGGGTGTTGCATCTTGTCAAATGCTTTTCCCGCATCTAAC
GAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAAACATACTA
ACTTCTATGTCATAGCGTATTTCAAGTTCTAAATCTATTCAGAGCATCAT
AAATATTAATACATTTTTAACTCACTTTAGTATCTATTGAGTTACAGTTT
ATTTAGGAGATGAAATGGATGAAACTTCTGACAAATATACTCTATTTGTT
CATGACAAATATACTCTATTTGAAAAATGAATCAATTTAGTAATGGTTAT
GTATATAATATAAAGTGATTATAATGCCAAATGATGTGACTTTGTCACAC
AGTGCAAAGGGATTTTAATGACCTTGAATGTTCTCAAAATGATTCTGAAG
TAAAATTCTACAATATTGATTTTGAATCTCTTATAAGATGCTATTGGCAG
AGAAATATGTTCTTTGTAAAGAAATTGTTTGTGTATGTGTGTGTGTNGTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTCTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTATATTTTTTTTTTTTTTTTTTTT
TTTATTTTTTTTTTTTTTTATTTTATTTTATTATTTTTTTTTTTTTTTTT
TAATTTTTTTATTATATTTTTAATATATTTATTTTTTATTTTATTTTTTT
TTTTTTTTATTTTTTTTTTTTTTTTTATTTTTTTTTTTATTTTAATTTTT
TTTATTTTATTTTATTATTTATTTTTTTTTTATTTTAATCTTATTTTTTT
TATTTATTATTTTTTATTTTTTTTATTTTTATATTTTATTTTTTATATTT
TTTTTTATTTTATTTATTNTTTATTCTTTTTATCTTTTTCTTTTCCTCCT
TTATTCTTTTATATTTCTTTTTTTCNTTATATTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_i02.g1 MSMg01no146_i02.g1 CHROMAT_FILE:
MSMg01no146_i02.g1 PHD_FILE: MSMg01no146_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:21 2005
         (518 letters)



>mm_chr15_21876789_21877707
          Length = 919

 Score =  922 bits (477), Expect = 0.0
 Identities = 504/513 (98%), Gaps = 2/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gatctttcc-aatcttttatcatgaatgggtgttgcatcttgtcaaatgcttttcccgca 66
           ||||||||| || |||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct: 207 gatctttccaaaacttttatcatgaatgggtgttggatcttgtcaaatgctttttctgca 266

                                                                       
Query: 67  tctaacgagatgatcatgtggtttttgtctttgagtttgtttatataaacatactaactt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctaacgagatgatcatgtggtttttgtctttgagtttgtttatataaacatactaactt 326

                                                                       
Query: 127 ctatgtcatagcgtatttcaagttctaaatctattcagagcatcataaatattaatacat 186
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctatgtcatagcctatttcaagttctaaatctattcagagcatcataaatattaatacat 386

                                                                       
Query: 187 ttttaactcactttagtatctattgagttacagtttatttaggagatgaaatggatgaaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttttaactcactttagtatctattgagttacagtttatttaggagatgaaatggatgaaa 446

                                                                       
Query: 247 cttctgacaaatatactctatttgttcatgacaaatatactctatttgaaaaatgaatca 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttctgacaaatatactctatttgttcatgacaaatatactctatttgaaaaatgaatca 506

                                                                       
Query: 307 atttagtaatggttatgtatataatataaagtgattataatgccaaatgatgtgactttg 366
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 507 atttagtaatggttatgtatataatataaagttattataatgccaaatgatgtgactttg 566

                                                                       
Query: 367 tcacacagtgcaaagggattttaatgaccttgaatgttctcaaaatgattctgaagtaaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcacacagtgcaaagggattttaatgaccttgaatgttctcaaaatgattctgaagtaaa 626

                                                                       
Query: 427 attctacaatattgattttgaatctcttataagatgctattggcagagaaatatgttctt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 attctacaatattgattttgaatctcttataagatgctattggcagagaaatatgttctt 686

                                            
Query: 487 tgtaaag-aaattgtttgtgtatgtgtgtgtgt 518
           ||||||| ||||||| |||||||||||||||||
Sbjct: 687 tgtaaaggaaattgtgtgtgtatgtgtgtgtgt 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 919
Length adjustment: 10
Effective length of query: 508
Effective length of database: 909
Effective search space:   461772
Effective search space used:   461772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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