BAC Information

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BAC

Clone NameMSMg01-146P06
Chromosome15 (Build37)
Map Location 31,843,277 - 31,843,667
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnnd2, 9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
Downstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146P06.T7 (MSMg01no146_p06.b1)MSMg01-146P06.TJ (MSMg01no146_p06.g1)
ACCAG350354AG350355
length1,1821,238
length of high quality
(start - end)		604 (90 - 693)492 (83 - 574)
definitionCHROMAT_FILE: MSMg01no146_p06.b1 PHD_FILE: MSMg01no146_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:21 2005CHROMAT_FILE: MSMg01no146_p06.g1 PHD_FILE: MSMg01no146_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATACTTTNNNNTAACAGTGGGCGCTATAGACTACTAAGGGAGAGGATC
CGCGGAATTCATATTAATGCTTTCACCTTTTAATGCTAGTAGTATGATTG
TATTCTTTCTTTCATTCTAATTATCATATATCTTCCACATTGCTTTGAAA
ATATTGATTCCATTGATTGAAGTGCTCAGAAAAACAAAAACAAACAAACA
AACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAGAGCCA
CCACTGCAACAAACCTCCTAAAAGCTTGATTAATTGATTAGAACTTTAAT
GATTGTGGAGAGTTTGTAATGCTAGTCAGGAGCAACATTCTTTTGAGTTA
TCTCAATCCCCAAATCACCACTTTGCCGACCTGTGCATATGACCTAAAGT
TCTTGTGATTCCCAGGAAAATGCTTTTGAGATGTATCAAGAGATTTCTAG
CTTCTACTGACCTCACAGCTAAGAATTATCAGATAGTATCCGAGGCCTTT
TGGAGATTGTTTCTAATGCATTGATTCAATCGGGAATCTGTGTGTCCAAA
CGCTAAAGGTCCTTGTCCCCAATTGGTTTTGATTGATGCCAACACTCAAT
GGTTGAGCATAGGGCAAGACCCTTAGAGTTGTGTGGGTGAGGACGCAGAG
AAGAGGAGACTCACCATGACTTGGGGGAGGGGGGAGGATAGGACACATTA
TAGGCAGGAATTAAAGTCAACCAATTTCATGAGATTTCATTTTTGTGCCT
ATTGTTCATTTCCAGAATGTTTTTGTTTTTAATGTCTAAAGTATTATTCA
TTTTCTCTTTTATTTTCTTTTATTTATTCCTTTTCTTTTTTTCTTTCATT
TTTCTTTTACTTCTATTTTTTTACTATTTTTTTCTCCTTATTTTTTTTCT
TTTTTTTTTCCTCTTTTCTTTATCTTATTCTTTTTTATTCTTACCCTTCT
TTACTTATTTCTTCATCTCTTTTACATTCCTTTTTTAATCTTTTCTTATT
TCTTTTACTTCTCTATATATATATTCTTTATNCTTTTTTTTTCTTTTATT
ACATTTATCTTTATTTTTCTTAACTTTTTTTTACTATTATTATTTCTTTT
TAATTTATCTTTATATATCTACTTTTCTTTCTTTTAATTACTATTTTCCT
TTACTCATTTCTTTTCTTTTACTCTTCTCTTT

CTTTTGTACGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTTTAGAACACTGCTGGTAGAAGCATAAATT
AGTCAAGCCCATAAAAAAATCAGTAGGACCACTCTTCACAAACTACCTAT
GTCCCAGATCCCTACTTCTTAGTATGTATCCAAATGACTCTAAGTCAGCA
TACGCTCCAAATACATGAACATATACAGTCAGGACAGCACCATTCATGAT
AGCCATAATAGGAAATGAAAGCACAATGGTAAAAGAAAGTGTGGTTTGTA
TACACAATAGAATTTTGTTCAGACATATAGAAGAATGTAATTCTGTCATT
TGATGAAAAATGAACACAACCAGAGATTATGCTATGCCAAATAAGCCAGA
CTCAGACACTGTATTTTCTCTATTTTGTGCATCATTTTTTATAAATCACA
TATGCAATACACATACAATGATATGATATATGATATAATATGGTATGATA
TGATAGCAGAAGGTAATCCAGGAAGAATGAGGGGGTTAGTGGGAGAGGGA
ACAATGTAGATAAAAAGGGAGGGTGTGTTTTCTCTTCTTTTTCTTTTCTT
CCTTTTCTTTTCTTTCCTTTCTTTTCCTTCTTCTTTTTTTTCTCTCTCTT
TTCTTTTCTTTCATATTTTTCTTTCTTTTCTCTTTTTTCTTTTTTTCTTA
TTCCCTTTTCTTCTCTTTTTCTTTTTCTTTCTTCTTTTTTCATTTCTTTC
TTTTCTTTTCTTTCCTCTTTTTCTTTTCTTCCTTTTTTTTTTTCATTTCT
CTTTCCTTTTTCACTATCTATTTTTCTTTCTTCTTTTTTCTCTCTTCTTT
TTTTTTCCTTTTTTTCTTCTTTCTCTTCTTTCTTCTTCCTCTTTTTCTCC
TCTCATTCTCTTCCTTTTTTCCTTCTTTCCTTTTTCCTTTCCTCCTTTTT
TCTCCCTTTTCTCTCTTCTTCTTTCTCCTTTTTTTCATTTCTATCTCTTT
TTTAATTCTTTTTTTTTTCTTTCTCCTCTTTCTTTTTCTCCCTTCTTTCA
TCACTTCCCTCTTCCCCCTCTTTATCCCTTCCTTATCTTCTTTTCTATTT
TCATTTCTTTCTCCCTTTCTTTCTTCTCTCTCACTTCCTCTCCTTCTTAT
CTCTCCATCCTACTCTCTATTTTACCTCTTTATCTCTTCCTTAGTTACCT
TTCCTATATTATTAATCTTCCTATTTTTTCTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_p06.g1 MSMg01no146_p06.g1 CHROMAT_FILE:
MSMg01no146_p06.g1 PHD_FILE: MSMg01no146_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:21 2005
         (492 letters)



>mm_chr15_31843277_31844167
          Length = 891

 Score =  712 bits (368), Expect = 0.0
 Identities = 386/392 (98%), Gaps = 1/392 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggtagaagcataaattagtcaagcccataaaaaaatcagtaggaccactcttcacaaa 60
           ||||||||||||||||||||||||||| || |||||||||||||||  ||||||||||||
Sbjct: 391 ctggtagaagcataaattagtcaagccaat-aaaaaatcagtaggatgactcttcacaaa 333

                                                                       
Query: 61  ctacctatgtcccagatccctacttcttagtatgtatccaaatgactctaagtcagcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctacctatgtcccagatccctacttcttagtatgtatccaaatgactctaagtcagcata 273

                                                                       
Query: 121 cgctccaaatacatgaacatatacagtcaggacagcaccattcatgatagccataatagg 180
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 272 cgctccaaatacatgaatatatacagtcaggacagcaccattcatgatagccatgatagg 213

                                                                       
Query: 181 aaatgaaagcacaatggtaaaagaaagtgtggtttgtatacacaatagaattttgttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aaatgaaagcacaatggtaaaagaaagtgtggtttgtatacacaatagaattttgttcag 153

                                                                       
Query: 241 acatatagaagaatgtaattctgtcatttgatgaaaaatgaacacaaccagagattatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 acatatagaagaatgtaattctgtcatttgatgaaaaatgaacacaaccagagattatgc 93

                                                                       
Query: 301 tatgccaaataagccagactcagacactgtattttctctattttgtgcatcattttttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  tatgccaaataagccagactcagacactgtattttctctattttgtgcatcattttttat 33

                                           
Query: 361 aaatcacatatgcaatacacatacaatgatat 392
           ||||||||||||||||||||||||||||||||
Sbjct: 32  aaatcacatatgcaatacacatacaatgatat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space:   424642
Effective search space used:   424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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