BAC Information

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BAC

Clone NameMSMg01-147K05
Chromosome15 (Build37)
Map Location 8,594,893 - 8,595,211
singlet/doubletsinglet
Overlap geneSlc1a3
Upstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633
Downstream geneEG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147K05.T7 (MSMg01no147_k05.b1)MSMg01-147K05.TJ (MSMg01no147_k05.g1)
ACCAG350861AG350862
length729699
length of high quality
(start - end)
271 (76 - 346)319 (70 - 388)
definitionCHROMAT_FILE: MSMg01no147_k05.b1 PHD_FILE: MSMg01no147_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:16 2005CHROMAT_FILE: MSMg01no147_k05.g1 PHD_FILE: MSMg01no147_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCCCAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATGTTATCTATTGCTTAAGTTTTATTGTATACATAG
GACTTGGTTTCATTATCGTCAGTAAGCTTTTTTTTTTTTTTTTTTTCCCA
AAATTGTGCTGGATTTAAGTATGCCTGAAATAAACTGCCCGGTGTCAGAC
TCTAGAAGTTTGAACCAATCCCAGCTACTGAGTTGTGCTGAACCATTCCT
TCTTGCCTCATGTGAATCATTACTCTGCCAGCCCTGGTGTTTAGAGGGAC
CCTTTCCCCTCCCCCTAACAATGAACATCTTGAAAGAAAAAAAAAAAAAA
ACTAACACCAAAAATACTTAAAAAAAAGAAAACCTCCCATCTTTGGTCTC
CCAGGTCTTCTTCAAAGCAATAAAAGAACTTAATTCCAACTATTATTATT
TCCCCTACCTTATTTTCCGCCTAAAATGTATGCCCTACCCTGGGGTGATG
GCGCTTACCTTCACTCTAAGCGTGAAAGAGGAAGAGAAAGAAAAAGGTGG
ATTTTCTCTGACCTCCCTGCCCTAGCCCACGTTACCTTCCCCGGATTTGT
TCCCAAAAAATTTTTTTTAAATAATTCCTATCTCCTCCCCCCTTGTGAAG
GGTTTAAAAGACTTTTTGTCACCCTCCCCTTACCCTCTACTGCAAATCCG
AAAAACGCCTAATTCCCACACAAACAATA
GCATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCCCCGCTCTCCCCTTTGGATTTAGTCTTT
TCTTTTGTCTCCTGCTCTGAATCTTATTAAGAGAAGTTTGGTCATAAGTT
GTGACTTAGCAAGTCCATGATACTTCCTCTGCATCTGCTGGATGCTGCCA
GAACTCTGCCACAGACACTTTCTTGGGGTTGAAACAGAAGGGAGAACTCA
GCCCCTACTCCCACCCCGATGATCTGGGGCCTGTGTTTGCTTTTTCTCCT
ACTGGGAATGTTCTTTTTGTATGACAGGATGTGCCCAGTCATTCTGACCT
GAGCAGAAAGTCACCTCAATCCTTTCTGTACCATCCAAGGCAGATGGTTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACTACACTTATGAGG
ACTGTGATCCCTCGCTGCTCTCTGCTGCAGCGGCTAGCGTGCTGAGTACT
CTATCCTAATCATAGAGCACAGAACCTCATGAACTGTGCGAAGAACTAAC
CAAGCACATGCAAGTACCTGAATGCCCCACGGTAGGTCAAACCTTTCCCC
AGCACGCGAGGAAATTTACGCCCAGGGCTTTTGCCGCGCCCGAAACACAC
CGAATTTCTCGCGGCTTCCACGCGAAGATCCTTGCACTTCCCCCCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_k05.g1 MSMg01no147_k05.g1 CHROMAT_FILE:
MSMg01no147_k05.g1 PHD_FILE: MSMg01no147_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:16 2005
         (319 letters)



>mm_chr15_8594693_8595411
          Length = 719

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccccgctctcccctttggatttagtcttttcttttgtctcctgctctgaatcttatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcccccgctctcccctttggatttagtcttttcttttgtctcctgctctgaatcttatta 260

                                                                       
Query: 61  agagaagtttggtcataagttgtgacttagcaagtccatgatacttcctctgcatctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaagtttggtcataagttgtgacttagcaagtccatgatacttcctctgcatctgct 320

                                                                       
Query: 121 ggatgctgccagaactctgccacagacactttcttggggttgaaacagaagggagaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatgctgccagaactctgccacagacactttcttggggttgaaacagaagggagaactc 380

                                                                       
Query: 181 agcccctactcccaccccgatgatctggggcctgtgtttgctttttctcctactgggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcccctactcccaccccgatgatctggggcctgtgtttgctttttctcctactgggaat 440

                                                                       
Query: 241 gttctttttgtatgacaggatgtgcccagtcattctgacctgagcagaaagtcacctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctttttgtatgacaggatgtgcccagtcattctgacctgagcagaaagtcacctcaa 500

                              
Query: 301 tcctttctgtaccatccaa 319
           |||||||||||||||||||
Sbjct: 501 tcctttctgtaccatccaa 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)