BAC Information

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BAC

Clone NameMSMg01-148B20
Chromosome15 (Build37)
Map Location 93,424,259 - 93,424,628
singlet/doubletsinglet
Overlap genePrickle1
Upstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623
Downstream geneZfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik, Adamts20, Pus7l, Irak4, Twf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B20.T7 (MSMg01no148_b20.b1)MSMg01-148B20.TJ (MSMg01no148_b20.g1)
ACCAG351209AG351210
length709745
length of high quality
(start - end)
375 (49 - 423)---
definitionCHROMAT_FILE: MSMg01no148_b20.b1 PHD_FILE: MSMg01no148_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:54 2005CHROMAT_FILE: MSMg01no148_b20.g1 PHD_FILE: MSMg01no148_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGC
GGAATTCATTCACAAGTCACCATTATTATTTCAAATTATCGGTAAGTATG
CTATCTCTTAACTGAGGGCAACACATCCATTTATTTCTAGTGCCTTTTGT
GTACAGCCCTTGCAGTGCTAACCTTTAAATCTTTAGTATAAACATTTCTG
GACGCGCTTATAAAATATCCCGACTCCCTGGTTGATGGCATTTAGGGCTC
TCTGGTACCAGCAGGTGTTATATTTTCCTTTCTTCCGGCTCCAGCTGGCT
CCAGTGATAGATTCTTGTCCCAGCCACCTAGGCTAGGACCACATTGGAGG
CAAAATGAACCCAGCTCTACCAGACAGCAAGATAAATGGCTGCTGTTTAA
GTTTTAAATCCCCTGGTGGGACCCCCCACTGTTCTAGGGAGAAAGGCTTG
ACAAACATTGCGTCATCCTTATGGAGCTGTCTTGATTAAAACAGAATTTT
TAGATTAGGTTGGTCTTAATCTAAAAGTGTATCTATCTTGCTGTCAGGGT
TTTTTTTGGTCCTCCCCCCCCCTTTCTATTCTAAAAACAGACATATTGTT
AGGGATGGTCAAACACGGCTGACACCTCCCAAGGGGCCCGGTCCCACTCT
TGGTAATAGAAGGCCTCCGAACACTGATACTTTACTGAGGATAATGGCGA
CAGCAAAGG
CCCCCATGACAGNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCCAATTCTTTAAAGCTCTGTGGTAGACAA
ATGACCAGAGACTTCTTGTCATGCCATATACTGGCTTGCCCATCTTCCCT
CTGTCTCACCCTGCATGTGTCTGTCTGCCTTTGTGTGTATGTATGCTCAC
CGNNCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCC
CCCCCACCCCCCCCCCCCCTCCCCCCTCCCCCCCCTCTCCACTCCCCCCC
CCCCCCTCCCCCAACCCCACCCCCCCCCCTCTTTTCCCCCTCATCCCCCC
CCCACCCCCTACCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCTCCACC
ATACCCATTTTATATTTATATCCCCCCANACATCCCCCCAAAAAAACTTA
AAATTACCCCACCCCCCCTCCCCATCCCCCCCACCTCCCCCCCCCCCCCC
CCATCCCCCCACCCCCCACACCCCCCCCCCCCCCCCCCCCCTCCCTCCCC
CCCTCTCCCCCTCCCCTCCCCTCCCCCCCCCCCATCTCCCCCCCCCCCCC
CCCACTCCCCCCCCCCCCACCCCCCCCCCCAAACCACTCCCCCCTAACCC
CCCCCCCCACACCCCCCCCCCAACCCCCCCCCCCTAACACCCTACCCCCC
CTCCCCCCATTCCCCCCCCCCCCCCCCTCACACCCCCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b20.b1 MSMg01no148_b20.b1 CHROMAT_FILE:
MSMg01no148_b20.b1 PHD_FILE: MSMg01no148_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:54 2005
         (375 letters)



>mm_chr15_93424056_93424830
          Length = 775

 Score =  654 bits (338), Expect = 0.0
 Identities = 362/370 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcattcacaagtcaccattattatttcaaattatcggtaagtatgctatctcttaa 63
           ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 gaattcattcacaagtcataattattatttcaaattatcagtaagtatgctatctcttaa 263

                                                                       
Query: 64  ctgagggcaacacatccatttatttctagtgccttttgtgtacagcccttgcagtgctaa 123
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 264 ctgagggcaacacatccatttatttctagtgccttttgtgtatagcccttgcagtgttaa 323

                                                                       
Query: 124 cctttaaatctttagtataaacatttctggacgcgcttataaaatatcccgactccctgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctttaaatctttagtataaacatttctggacgcgcttataaaatatcccgactccctgg 383

                                                                       
Query: 184 ttgatggcatttagggctctctggtaccagcaggtgttatattttcctttcttccggctc 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 ttgatggcatttagggctctctggtaccagcaggtgttatatttttctttcttccggctc 443

                                                                       
Query: 244 cagctggctccagtgatagattcttgtcccagccacctaggctaggaccacattggaggc 303
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 444 cagctggctccagtgatagattcttgttccagccacctaggctaggaccacattggaggc 503

                                                                       
Query: 304 aaaatgaacccagctctaccagacagcaagataaatggctgctgtttaagttttaaatcc 363
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 aaaatgaacccagctctaccagacagcaagataaatggctgttgtttaagttttaaatcc 563

                     
Query: 364 cctggtggga 373
           ||||||||||
Sbjct: 564 cctggtggga 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)