BAC Information

Click to search

BAC

Clone NameMSMg01-148G01
Chromosome15 (Build37)
Map Location 87,675,509 - 87,824,079
singlet/doubletdoublet
Overlap geneLOC100042329
Upstream geneLOC100042309, AW049604
Downstream geneLOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148G01.T7 (MSMg01no148_g01.b1)MSMg01-148G01.TJ (MSMg01no148_g01.g1)
ACCAG351388AG351389
length733739
length of high quality
(start - end)
209 (70 - 278)109 (73 - 181)
definitionCHROMAT_FILE: MSMg01no148_g01.b1 PHD_FILE: MSMg01no148_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:15 2005CHROMAT_FILE: MSMg01no148_g01.g1 PHD_FILE: MSMg01no148_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,675,509 - 87,675,717)(87,823,971 - 87,824,079)
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAAGGATCCGCG
GAATTCTCAAGTTTCCATCCCACCCCATGCACAGAGAGCCCAGCCCAGGA
ATCCTGGTTCTTTTACTCAGGTTCCCTGTGCTCTGGAAGTATTAGCCTTC
ATGGCACCAGGGATGCTCTGACCTGAAATGGGCAGCTTCTAGTTAGTTTC
TGGAACTGAGTCTGCTGCTCTTCAAGGGCTGGGATGTGTATGACTCTCAT
AGCTGTGTTTTGTCTGCTTCATATGCAGTGTTTGGGGGACCCACTTTTAT
ACATATAGAAATGTGTTTTCTTATTGACTCTGGTCCCCTGCTCCAAATTT
AGGGGCCAGTTTTTGGCTTAGCAGTCTTCATGCCCAGTGGACTACGTTGT
CACATGGTCACCGCCCCCCACATGAATCTGCTTCATGGCTGCTATGGAAA
GGTTATTTCATCATAATGCCCATCATCTCTGTGTTCAGCTAAGTCAACTG
CCATCCTTACTCGGTCTTGCCTCTGCCGCCTCTGCATACAGGTTTATTTC
CAATCTTGTTCTAAGCGTTTTCGCTCTGCACCTCTTTCTCCTTCCCCCCT
CCCCTTTTACCGTCTTTCTTTCTCTCCCGCCCCTTATACACTACTTTTAT
CATTATTTCCCCCGTTTTTTCGTTTCCCCCCCCCCCTTTCGCCCTTCCAT
TCCAATTTTTTTTTTTCCTTCTTCCCCCTCCAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGCACTGTGAGGTGAA
CTATAGAATTTTCAACAAAATCAAGGTGTGGTGGGGCTAACACAGAACCC
AAGTTTGGTCAGTGAAATTCCATTTCTGACCTGGTGGGAACTATGTAGTC
TTTGTAATTGAGTTCAGAATACCTGGGAGGGTGCAGAGGTGTGTACAACC
AAGCTGTCTCATCTGTTTCCTAGGTTAGAATGATGCTCAAAGTCCTCCAA
ACTCATTTACCTCGTGGTCCCCCATGCTATAGACATTATTGTTACCCCAC
AGTCTCATTCCTCCTGTTTTTTCTACCAGGGCACCCAGGATTTACCTACC
CTCGCTGTCATCTGTTTACGGGGCATCATCTTTCCATTTTCAGACCATAG
GCCCTTCCAGCACCCACAATATGTGTATGCGATGCTCTCCCCTTCTCTCT
GTTCCTCCCTGCCACATTTGCTGTGATAATTCTTATGTTGAGGTTTCTCA
CCATTTTGCTTATGCTCCATTACTGCGCTCTTCCTGTATTTCTCGTGTCT
GCCCCGCGAAGTAACGAATTGTTTGGTCCTTTCACCGCATTGTTCTTCAT
GTATGCCTTTTCCTCTCTCCCCTTACTCTTTCTTGCCATCCTTTCTCCCG
AGTCTTTCATCTTTTGTCCCTCTCCTCGCCCCTTTTTTTTCCCCGCCCTC
TTTCCCTTCTCGTTTTATCCCTTTCCTTTTTTTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_g01.b1 MSMg01no148_g01.b1 CHROMAT_FILE:
MSMg01no148_g01.b1 PHD_FILE: MSMg01no148_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:15 2005
         (209 letters)



>mm_chr15_87675309_87675917
          Length = 609

 Score =  397 bits (205), Expect = e-115
 Identities = 208/209 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaccccatgcacagagagcccagcccaggaatcctggttcttttactcaggttccctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaccccatgcacagagagcccagcccaggaatcctggttcttttactcaggttccctgt 260

                                                                       
Query: 61  gctctggaagtattagccttcatggcaccagggatgctctgacctgaaatgggcagcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctggaagtattagccttcatggcaccagggatgctctgacctgaaatgggcagcttc 320

                                                                       
Query: 121 tagttagtttctggaactgagtctgctgctcttcaagggctgggatgtgtatgactctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagttagtttctggaactgagtctgctgctcttcaagggctgggatgtgtatgactctca 380

                                        
Query: 181 tagctgtgttttgtctgcttcatatgcag 209
           |||||||||||||||||||||||| ||||
Sbjct: 381 tagctgtgttttgtctgcttcataggcag 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no148_g01.g1 MSMg01no148_g01.g1 CHROMAT_FILE:
MSMg01no148_g01.g1 PHD_FILE: MSMg01no148_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:15 2005
         (109 letters)



>mm_chr15_87823771_87824279
          Length = 509

 Score =  195 bits (101), Expect = 5e-55
 Identities = 107/109 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtgtggtggggctaacacagaacccaagtttggtcagtgaaattccatttctgacct 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 309 aaggtgtggtggggctaacacagaacccaagtttgctcagtgaaattccatttctgacct 250

                                                            
Query: 61  ggtgggaactatgtagtctttgtaattgagttcagaatacctgggaggg 109
           |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 249 ggtgggaactatgtcgtctttgtaattgagttcagaatacctgggaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)