BAC Information

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BAC

Clone NameMSMg01-149A14
Chromosome15 (Build37)
Map Location 49,897,495 - 49,897,817
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039600, LOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149A14.T7 (MSMg01no149_a14.b1)MSMg01-149A14.TJ (MSMg01no149_a14.g1)
ACCAG351867AG351868
length695696
length of high quality
(start - end)
556 (47 - 602)551 (75 - 625)
definitionCHROMAT_FILE: MSMg01no149_a14.b1 PHD_FILE: MSMg01no149_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:09 2005CHROMAT_FILE: MSMg01no149_a14.g1 PHD_FILE: MSMg01no149_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGT
CAAATGCTTTCTCATCATCTAATGAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATACTGGATTACGTCGATGGATTTGCATATATTGAACCA
TCCCTGCATCCCTGGGATGAAACCTACTTGGTCAGGATGGATGATTGTTT
TGATGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTAAGGATTTTTGGA
TCAATATTCATAAGGGATATTGGTCTGAAGTTCCCTATGTTTGTGGGGTC
TTTTTGTGGTTTAGGTATCAGAGTAATTGTGGCTTCGTAGAATGAGTTGT
GTAGAGAACCTTCTGTTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGG
ATTAGATCTTCTTTGAAGGTCGGATAGAACTCTGCACTAAACCCATCTGG
TCCTGGGCTTTTTTTGGTTGGGAGACTATTAATGACTACTTCTATTTCTT
TGGGGGATATCAGGCTGTTTAGATCATTAACCTGATCTTGATTCAACTTT
GGTACCTGGTATCTGTCTAGAAACTACTCCATTTCATCCAGGTTCTCCAG
TTTTGTTGAGTATACCCTTTTGTAGAAAGATCTGATGGTGTTTTG
NCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTACACCTCCCAGGTTTTAATTAC
TATTTATGCAAATGTAAAAGCATTTTTATGCCTCATATATGCACAGAGAT
ATTCATATCCTAAACCTTGCTGGAAGTATTCAGAACTGCTTTTTTTTTAA
TTTTTATTTTTTATTAGATAGTTTCTTTATTTACATTTCAAATTTTATCC
TCTTTCCTCATTTCACCTCCGAACCGCCCCCATCCCACCCCACTTCCCTC
TGTTCCCTAACCTACCCACTCCTGCTTCTCTGTCCTAGCATTTCCCTACA
TTGGGGCATCAAGCCTTCACAGGACCAAGGCCTTCTCTTCTCACTGATGT
CCAACAAGGACATCTTCTGCGGTCCTTCAGAGGATCAAAATACCCATAGG
AGGAAATACAGAGACAAAGTTTGGAGCAGAAACTGAAGGCCATCTAGTGA
CTCTCCTACCTGGGGATCTATCCCATATATGGTTACCAAACCCAGACACT
ATTGTGGATGCCGACAAGTGCTTGCTAACAGGAGCCTGATAGAGCTTTCT
CCTGAGAGGCTTTGCCAGTTCCTGACAAATACAGAAGTGGATGCTCACAG
CCATCCATTGGNCTGAGCACAGGGACCCTATTGGACGAACGAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_a14.g1 MSMg01no149_a14.g1 CHROMAT_FILE:
MSMg01no149_a14.g1 PHD_FILE: MSMg01no149_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:09 2005
         (551 letters)



>mm_chr15_49897495_49898445
          Length = 951

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttacacctcccaggttttaattactatttatgcaaatgtaaaagcatttttatgcctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 323 ttttacacctcccaggttttaattactatttatgcaaatgtaaaagcattttcatgcctc 264

                                                                       
Query: 61  atatatgcacagagatattcatatcctaaaccttgctggaagtattcagaactgcttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atatatgcacagagatattcatatcctaaaccttgctggaagtattcagaactgcttttt 204

                                                                       
Query: 121 ttttaatttttattttttattagatagtttctttatttacatttcaaattttatcctctt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttaaatttttattttttattagatagtttctttatttacatttcaaattttatcctctt 144

                                                                       
Query: 181 tcctcatttcacctccgaaccgcccccatcccaccccacttccctctgttccctaaccta 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tcctcatttcacctccgaaccacccccatcccaccccacttccctctgttccctaaccta 84

                                                                       
Query: 241 cccactcctgcttctctgtcctagcatttccctacattggggcatcaagccttcacagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  cccactcctgcttctctgtcctagcatttccctacattggggcatcaagccttcacagga 24

                                  
Query: 301 ccaaggccttctcttctcactga 323
           |||||||||||||||||||||||
Sbjct: 23  ccaaggccttctcttctcactga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)