XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGAGTACACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCAT
TCTTAATCATCAGGAAATGTAAATCAAAGCAACCCTGAGATTTCACATCA
CACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGATAGCAGATGCTGG
CAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTAGGATTACAA
GCTTGTACAACCACTATGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGG
ACATAGTACTACTGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCA
GAAGATGTTCCAACCATTAAGAAGGACACATGCTCCACTATGTTCATAGC
AGCCTTACTCATAATAGCCACAAGCTGAAAAGAACCCAGATGTCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATAGAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATACCTAGGCAAATCGATGGA
CCTGAAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCAA
ATGATATGTACTCACTGATAACTGGATATTAGCCCAGAAACTTAGAATAC
CCACGATGCAAGATACAATCTGCAAAACACATGAAACTCNAAAAGAACAA
AGAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTATCATTTATTTTTTAATTGAAAAT
AGAATCTTTTATCATACAATAAATCTTTATTATTGTTACCCATCCCTCCA
CTTCTCCACTTGCTGCAGTTCCTTCCCAAGTCATACATCCAGATCTACTT
AATATATTTCTTCCACTTGAACAAAACAGATTTCTAAGAGATAACTATCA
GCCGTGGATATATATATATATACATATATACATATATACATAAAGTGTGT
GTGCATATATATATATGGCAAAATACTTTCAAAATACTTCTCCTATCCCA
ACAGGAGAAAAATAGTCCCAAGAGAAGTATATATAGTCACTGATCCATTA
ATTTTCAGAATAAGGATCCCACAACAATACAAATATAATATTTGTAATAT
GTAATTATATATGTATATACATTGTATAATATTTTTATTAAATATTGAAT
ATCATTATGCATCATATATCAAACATCATACAACATACTGTATTTATGTT
ATATGTCATGTGTTATATGTTTCATGTTGTATGTTATATCTTATACTGAA
ATAGTATAATATATAACATATAATTATACTATATAATTCTTTATGTTATA
CATTATGTATTAATATATAACATATTANAAGGATATATCATAAAATA

Query= MSMg01no149_h21.g1 MSMg01no149_h21.g1 CHROMAT_FILE:
MSMg01no149_h21.g1 PHD_FILE: MSMg01no149_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:47 2005
         (624 letters)



>mm_chr15_14400711_14401734
          Length = 1024

 Score =  847 bits (438), Expect = 0.0
 Identities = 599/723 (82%), Gaps = 112/723 (15%)
 Strand = Plus / Plus

                                                                       
Query: 4   atcatttattttttaattgaaaatagaatcttttatcatacaataaatctttattattgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 atcatttattttttaattgaaaatagaatcttttatcatacaataaatctttattattgt 171

                                                                       
Query: 64  tacccatccctccacttctccacttgctgcagttccttcccaagtcatacatccagatct 123
           ||||||||||||||    |    |||||||||||||||||||||||||||||||||||||
Sbjct: 172 tacccatccctcca----t----ttgctgcagttccttcccaagtcatacatccagatct 223

                                                                       
Query: 124 acttaatatatttcttccacttgaacaaaacagatttctaagagataactatcagccgtg 183
           || || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 224 ac-tactatatttcttccacttgaacaaaacagatttctaagagataacaatcagccgtg 282

                                                                       
Query: 184 g--------------------------------atatatatatatatac----------- 200
           |                                ||||||||||||||||           
Sbjct: 283 gagatatatatatatatatatatatatatatatatatatatatatatacatctatatata 342

                                                                       
Query: 201 -----------------------------------atat--------------------- 204
                                              ||||                     
Sbjct: 343 tatatgtatgtatatatatatatatatatatatatatatacacacacacacacacacaca 402

                                                                       
Query: 205 ---atacatatatacataaagtgtgtgtgcatatatatatatggcaaaatactttcaaaa 261
              ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cacatacatatatacatatagtgtgtgtgcatatatatatatggcaaaatactttcaaaa 462

                                                                       
Query: 262 tacttctcctatcccaacaggagaaaaatagtcccaagagaagtatatatagtcactgat 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tacttctcctatcccaacaggagaaaaatagtcccaagagaagtatatatagtcactgat 522

                                                                       
Query: 322 ccattaattttcagaataaggatcccacaacaatacaaatataatatttgtaatatgtaa 381
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ccattcattttcagaataaggatcccacaacaatacaaatataatatttgtaatatgtaa 582

                                                                       
Query: 382 ttatatatgtatatacattgtataatatttttattaaatattgaatatcattatgcatca 441
           ||||||| ||||||||||||||||||||||| ||||  ||||||||||||||||||||||
Sbjct: 583 ttatatacgtatatacattgtataatatttt-attagctattgaatatcattatgcatca 641

                                                                       
Query: 442 tatatcaaacatcatacaacatactgtatttatgttatatgtcatgtgttatatgtttca 501
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 642 tatatcaaacttcatacaacatgctgtatttatgttatatgtcatgtgttatatgtttca 701

                                                                       
Query: 502 tgttgtatgttatatcttatactgaaatagtataatatataacatataattatactatat 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tgttgtatgttatatcttatactgaaatagtataatatataacatataattatactatat 761

                                                                       
Query: 562 aattctttatgttatacattatgtattaatatataacatattanaaggatatatcataaa 621
           |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 762 aattctttatgttatatattatatattaatatataacatattaaaaggatatatcataaa 821

              
Query: 622 ata 624
           |||
Sbjct: 822 ata 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 106
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)