BAC Information

Click to search

BAC

Clone NameMSMg01-149K01
Chromosome15 (Build37)
Map Location 11,833,909 - 11,834,282
singlet/doubletsinglet
Overlap geneNpr3
Upstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
Downstream geneLOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149K01.T7 (MSMg01no149_k01.b1)MSMg01-149K01.TJ (MSMg01no149_k01.g1)
ACCAG352292AG352293
length709701
length of high quality
(start - end)
396 (68 - 463)374 (75 - 448)
definitionCHROMAT_FILE: MSMg01no149_k01.b1 PHD_FILE: MSMg01no149_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:58 2005CHROMAT_FILE: MSMg01no149_k01.g1 PHD_FILE: MSMg01no149_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAACCGCGG
AATTCCAGAGACAATCCAGCGTGCACAGGGCCTGCACACATCTGCACCAG
ATGGGGTCCTGGAGCTGAAAGGAGAAGTAGACACACACCCACATCCTTAG
ACCAGAGGATGTCTCCAATTGGTAACCACTTTCAATTGAAAATTCCATTT
TTACCAAAGGCGTTTTACTGGGGAAACAAACGGCTGTTAAGAGTAGGCTC
CATGCCCAGCAGTGGACGGTCTACAGAAGGCGAACTCAGGGAGAACATTT
GGAGGCATCTTGTCTCACAATGTAGCATCAGGGTATTTTTTTTTTCAATT
TCATCTTTTTAAAATTTTTATTCTTATTTTTTTCTATTTTCATACCCTAC
AGGTCCTTTGAATTTATATTACGGCTTGCAGTTTTGTGCTTTTACGGAAT
TCCTGAGCACGAACGAGTGGATCTCTGTGCCTGAACCTGTTTCATATGCC
TTTCCTTTTTATTAAATCTGTCTTCGTTTACATTTCAAATGCTATCCCCC
TTTCCAAGATCCCCCTCTGAACATTCCCAATCCCCTCCCCCCTCCCGCTG
CTCACCAACCCACCTAATCCCTGTTTCCGCGACCTGGCATCCCCTACACT
GTCCGCAAACCAATGTCCCAGGACCCAAGCTTTGTTTTCTCACTGATGAC
CCCCAAGGC
CCCGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTACTCTGTCCCTTGCAGTCGCGCG
CCCCCTGGCAGGGCCACAGCGTCTGGGGACGCCCCAGCAGTCTCGCAGCT
TCTTGACTAGCTGGGGGTTGGGGCGCGTCTCCTGGCTCCCCTGGCTGCTC
TTTCCACTGACCCTAGGTCTCTTTTTAAAGCCTTCCTTTTAGATTCCTTC
CATGCCCTTTCTAGTGTCTTACAAGCTTCGATACAAGCACCAGAAGTGCG
TCGCCGTGTCTGAATTCAGGCGACTCTTACTTCCCCCGGGAGCTTTGGGC
TTCGAAGCCTCTGAAAGCGCGGGCAGAGCTGGGCTTGGGCGGAGCGCGCC
GGAGGATCGTGCGCCGAGCTTCCTTCCCACGGGTCCCCTGCCCGGCCCTT
TCTCCGCAAGTCGCTGAGGGTTTGGAACAGTACCCAAACTAGACAGAGAA
TCTGATACTGGGGAATGCGATCATGGCTACGGGGAGCGTGGGCAATTCTC
CGCAGCTGTTCAGGTTTCTGTCGCGTATATACAGGAAGGAAGCCAATCTC
AGAATGGCCCACGATTCCGGACGTCACGGATGGGGCTCACACATGGACGA
CTCCCGCCTTTGTTCCCCCTTGGCGCGCACGATCCTAAAATGTATGTGGT
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_k01.g1 MSMg01no149_k01.g1 CHROMAT_FILE:
MSMg01no149_k01.g1 PHD_FILE: MSMg01no149_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:58 2005
         (374 letters)



>mm_chr15_11833709_11834482
          Length = 774

 Score =  685 bits (354), Expect = 0.0
 Identities = 369/374 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctactctgtcccttgcagtcgcgcgccccctggcagggccacagcgtctggggacgccc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cctactctgtccattgcagtcgcgcgccccctggcagggccacagcgtctggggacgccc 515

                                                                       
Query: 61  cagcagtctcgcagcttcttgactagctgggggttggggcgcgtctcctggctcccctgg 120
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 514 cagcagtctcgcagcttcttgactagctgggggttgggacgcatctcctggctcccctgg 455

                                                                       
Query: 121 ctgctctttccactgaccctaggtctctttttaaagccttccttttagattccttccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctgctctttccactgaccctaggtctctttttaaagccttccttttagattccttccatg 395

                                                                       
Query: 181 ccctttctagtgtcttacaagcttcgatacaagcaccagaagtgcgtcgccgtgtctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccctttctagtgtcttacaagcttcgatacaagcaccagaagtgcgtcgccgtgtctgaa 335

                                                                       
Query: 241 ttcaggcgactcttacttcccccgggagctttgggcttcgaagcctctgaaagcgcgggc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 334 ttcaggcgactctcacttcccccgggagctttgggcttcgaagcctctgaaagcgcgcgc 275

                                                                       
Query: 301 agagctgggcttgggcggagcgcgccggaggatcgtgcgccgagcttccttcccacgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agagctgggcttgggcggagcgcgccggaggatcgtgcgccgagcttccttcccacgggt 215

                         
Query: 361 cccctgcccggccc 374
           ||||||||||||||
Sbjct: 214 cccctgcccggccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)