BAC Information

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BAC

Clone NameMSMg01-149N19
Chromosome15 (Build37)
Map Location 21,619,362 - 21,619,938
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149N19.T7 (MSMg01no149_n19.b1)MSMg01-149N19.TJ (MSMg01no149_n19.g1)
ACCAG352461AG352462
length689685
length of high quality
(start - end)
546 (71 - 616)577 (76 - 652)
definitionCHROMAT_FILE: MSMg01no149_n19.b1 PHD_FILE: MSMg01no149_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:16 2005CHROMAT_FILE: MSMg01no149_n19.g1 PHD_FILE: MSMg01no149_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCG
CGGAATTCACCAGAGTTTCCGTTGCTACAGTGAGCAGAGATGGAAACATA
ACTCAAGCCCTATGGAGGAAACCAGCAGATCATATGTGAATTTCAGACTC
TGGAACAAGAAGCTGTACGGTTGAAGTTAACTTGGATACCCCAAGATGCT
AGATATGCCAGAGTTGTGAAATGCCTGCTGAAGAAAGCTGGACTTGGATC
TAGCCCAAGAGAAAGATATGTACTATAGTCATCAAATATGAAAGGAGTTG
GACATTAGGCACAGAGATGAAGAGTTTGAAGATTGCCCAGCTGGCTTTTG
GTCTTGCTTTCATCCAGTATTTTCTCACTATGACACTGTGAAATGATAAT
GTATATCCAGTAATGGTGCAGGCATTCGCTCAGCTATATAAATTTTGATT
TTACACTTAAATGATTAAATAAACCTAAGAAGACACTTTGAACATTGGAC
TTTTAATGTTGTTGAGGATGCTATTAAACTATGGGAACTCTGGAAATTGT
ACTAAATGTATTTTGCATTATGCTATGGCTAGGTATGGCTCCCTTAGACT
CATGTTTGAACAAGACAATGGGTGCCAGGGAGTGAATGAAGTAGTTTGAC
TATGTTTGATCCAGGATCTGAGTGGCAGTATTAGAAGGA
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCATGTTGCATTTGACTTCATTTT
GAAAGAAAAAGACACTTTTCTAAGCCCAATTGCAAGATGCAAATTAATGG
AAATATCAGAAGAAAAAAGAGATTTATTTACTGTAAATAAATAAATTCCA
CTTTGTCCCGCACTTTGGAATGGAGGACAAAGATATCCCAGTGATCCTTA
TACGTTCTTCTTCAGGGTCCAGACATGAAGGTATGATGTGCTTCAAATAG
ATAATAATAAGACATATACATATCTAAGCCATCTGGTCAAGGTGTGGTTC
TCCGATCTCCACGGTATCATCTCTAAATTCTCAAGTCAGGTTGGCAACTC
ATGCAATGTAACCTGACACTAAATATAAATATATTTCCCAGAAAAAAAGT
CCTCCTGTGCTTTCAACCATTTTTCTCTCAATCTGGGAAATTTTTTTGAT
AATTCTAATTTTTTGTTGTTTCATTCTTTCGTAGTCTGATACTCAAAAGG
GAAAGAATAAATGTCTCATTAGAATATATTCATTGCTGGCAGATAGGCTG
GTTTTATACACATACATATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTTGTTATGTATGCNNTTCTTTTCTCCNNTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_n19.g1 MSMg01no149_n19.g1 CHROMAT_FILE:
MSMg01no149_n19.g1 PHD_FILE: MSMg01no149_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:16 2005
         (577 letters)



>mm_chr15_21619194_21620170
          Length = 977

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatgttgcatttgacttcattttgaaagaaaaagacacttttctaagcccaattgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttcatgttgcatttgacttcattttgaaagaaaaagacacttttctaagcccaattgcaa 686

                                                                       
Query: 61  gatgcaaattaatggaaatatcagaagaaaaaagagatttatttactgtaaataaataaa 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatgcaaattaatagaaatatcagaagaaaaaagagatttatttactgtaaataaataaa 626

                                                                       
Query: 121 ttccactttgtcccgcactttggaatggaggacaaagatatcccagtgatccttatacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttccactttgtcccgcactttggaatggaggacaaagatatcccagtgatccttatacgt 566

                                                                       
Query: 181 tcttcttcagggtccagacatgaaggtatgatgtgcttcaaatagataataataagacat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 tcttcttcagggtccagacatgaaggtatgatgtgcttcaaatagataataaaaagacat 506

                                                                       
Query: 241 atacatatctaagccatctggtcaaggtgtggttctccgatctccacggtatcatctcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atacatatctaagccatctggtcaaggtgtggttctccgatctccacggtatcatctcta 446

                                                                       
Query: 301 aattctcaagtcaggttggcaactcatgcaatgtaacctgacactaaatataaatatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattctcaagtcaggttggcaactcatgcaatgtaacctgacactaaatataaatatatt 386

                                                                       
Query: 361 tcccagaaaaaaagtcctcctgtgctttcaaccatttttctctcaatctgggaaattttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccagaaaaaaagtcctcctgtgctttcaaccatttttctctcaatctgggaaattttt 326

                                                                       
Query: 421 ttgataattctaattttttgttgtttcattctttcgtagtctgatactcaaaagggaaag 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgataattctaattttttattgtttcattctttcgtagtctgatactcaaaagggaaag 266

                                                                       
Query: 481 aataaatgtctcattagaatatattcattgctggcagataggctggttttatacacatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aataaatgtctcattagaatatattcattgctggcagataggctggttttatacacatac 206

                                                
Query: 541 atatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 205 atatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)