BAC Information

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BAC

Clone NameMSMg01-150G01
Chromosome15 (Build37)
Map Location 9,538,967 - 9,539,427
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r
Downstream geneC230086A09Rik, Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150G01.T7 (MSMg01no150_g01.b1)MSMg01-150G01.TJ (MSMg01no150_g01.g1)
ACCAG352835AG352836
length712726
length of high quality
(start - end)
568 (40 - 607)481 (76 - 556)
definitionCHROMAT_FILE: MSMg01no150_g01.b1 PHD_FILE: MSMg01no150_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:55 2005CHROMAT_FILE: MSMg01no150_g01.g1 PHD_FILE: MSMg01no150_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTTTCTCTTTTTAAATAGAACAAGCCGCACAATTTCGACTTGAGCTAATA
AAGTTGAAAGCTTTGTCCGTCCTGGAAGATTTAGTAACAAAGGTGATTGA
TGTCTACAGGCTCATGGAAAAATGGCTTGGTAAGAGATATTTGAATGAAA
TGGCCAGGTAAGGTTTTCCTCAATCAAAAATAATCATACTAAATGCCAAA
AATGCAAAACTTGACACGGGTGTTTAAGATATCCACAGATTTAAATTACA
ACACACGCGCGCACACACAAACACACTCACATACACACACACACACACGT
GCAGACACATGTGTCTCTGTGTATCTCTGTGTCTGTATCTCTGCCCCCGC
CACCCCACCCGCACCTGTTATGAACACTCAAAATGAATACCACCATCACA
TTTGTGTAGAGTATTTTTCTGCCTGTCAGTGGGCTCTGCCACAATATCAT
TTTCACTCTGGGAGTTCAGTCTACATGGTAATATTGCATGTAATTTTAAT
CCAGGAGATTTCCAAATTATTTCAAATTATAATGAGTACTAGATCCTAAT
TGTTCAATGCTCATCAGCTTAATCTACAAAAAGGACTCCCACTAGGCTAT
TCCACCAGCTTCAGCTTGAACTAGATTCTGCCATATGTATATTATAGGGT
AGATTTGCCAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGTTTAGCTCTGAGCCCCATTTT
TAATGGGGTTATTTGATTTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTAT
ATGTTGGGTATTAGTCTCCTATCAGATTTAGGATTGGTTAAAATCCTTTC
CCAATCTGTTGGTGCCCTTTTTGTTGCTGGCCTTATTGACAGTGTCTTTT
GCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGA
TCTTTCAGAAAAAGCCATTGCTGTTCTATTTAGGAAGTTTTTCCCTGTGC
CCATATCTTTGAGGCTTTTCCCTACTTTCTCCTCTATTAATTTCAGTGTC
TCTGGTCTTATGTGCAGGTCTTTGATCCACTTAGACTTGAGCTTTGTACA
AGGAGATAAGAATGGATCAATTTGGGTTCTCCGCTGAACTTAGGAAATTA
GTCTGAACAGGTGAGAGGGTGCACCACAGAACCAGACAGCTTCTGGGACA
GGCGGAGCCACAGAGCCGCTGAGGCAGCACCTTTTTCGGACCGCAGACAG
CTGGCCACTGTCCCGACCAGAGAACAGGTGTCTGCCTGGCTCGGAAGGCC
TCAGCCTCAGGAGCAGCGGACGCCATCTTGGTTCTGGGACTCCGCCGAAA
TTACGAAATTAGCCTGAACAGGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_g01.b1 MSMg01no150_g01.b1 CHROMAT_FILE:
MSMg01no150_g01.b1 PHD_FILE: MSMg01no150_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:55 2005
         (568 letters)



>mm_chr15_9538967_9539934
          Length = 968

 Score =  868 bits (449), Expect = 0.0
 Identities = 459/463 (99%), Gaps = 2/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtttctctttttaaatagaacaagccgcacaatttcgacttgagctaataaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaattcagtttctctttttaaatagaacaagccgcacaatttcgacttgagctaataaag 402

                                                                       
Query: 65  ttgaaagctttgtccgtcctggaagatttagtaacaaaggtgattgatgtctacaggctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttgaaagctttgtccgtcctggaagatttagtaacaaaggtgattgatgtctacaggctc 342

                                                                       
Query: 125 atggaaaaatggcttggtaagagatatttgaatgaaatggccaggtaaggttttcctcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atggaaaaatggcttggtaagagatatttgaatgaaatggccaggtaaggttttcctcaa 282

                                                                       
Query: 185 tcaaaaataatcatactaaatgccaaaaatgcaaaacttgacacgggtgtttaagatatc 244
           ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 281 tcaaaaataatcatactcaatgccaaaaatgcaaaaattgacacgggtgtttaagatatc 222

                                                                       
Query: 245 cacagatttaaattacaacacacgcgcgcacacacaaacacactcacatacacacacaca 304
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 221 cacagatttaaattacaacacacgcgcgcacacacaaacacactcacat--acacacaca 164

                                                                       
Query: 305 cacacgtgcagacacatgtgtctctgtgtatctctgtgtctgtatctctgcccccgccac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 cacacgtgcagacacatgtgtctctgtgtatctctgtgtctgtatctctgcccccgccac 104

                                                                       
Query: 365 cccacccgcacctgttatgaacactcaaaatgaataccaccatcacatttgtgtagagta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 cccacccgcacctgttatgaacactcaaaatgaataccaccatcacatttgtgtagagta 44

                                                      
Query: 425 tttttctgcctgtcagtgggctctgccacaatatcattttcac 467
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  tttttctgcctgtcagtgggctctgccacaatatcattttcac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)