BAC Information

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BAC

Clone NameMSMg01-150J09
Chromosome15 (Build37)
Map Location 67,190,554 - 67,190,882
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150J09.T7 (MSMg01no150_j09.b1)MSMg01-150J09.TJ (MSMg01no150_j09.g1)
ACCAG352983AG352984
length736762
length of high quality
(start - end)
521 (41 - 561)340 (72 - 411)
definitionCHROMAT_FILE: MSMg01no150_j09.b1 PHD_FILE: MSMg01no150_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:11 2005CHROMAT_FILE: MSMg01no150_j09.g1 PHD_FILE: MSMg01no150_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATT
CTCACCTGTAGCCTACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGCTGGGAGT
GCAGGCTTGTTCAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGATGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGCTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCACAAAG
AAACTCACACAATATGTATTCACTGATAAATGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAAGA
AGAATGAATACTGAAGTGTGGACACTATGCCCCTCN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTGGCTGGTGAAGGGAAATGAAGTCAT
TCTGAGAGCTGTGGTTCTTCCTTGGAGGTCTACTTGGAGCTAGCGGGTCT
TTCTCCAGGCTTCTGAAAGCCTAGGCTAGAGGTAGCAGTCATAGGTAAGT
TAGAGGACACAGGTGTGAGCTCCAGAAAGCATTCCACCTGCAGCCAGAGG
AGGCTGTTCTAGATTAGAAGGTCAATAGCCATCCTCTAAGAGGATCACAG
TGTAGAAGATGTGAACTCTAGGCTCTTAACACTCCGGTATCTTAAGGGTA
AATTTCTTAAAATCTTACTTTCTATTATTCCATTGTGTGTGCGTGTGTGT
GTGTGTGTGTNCCCCCCTCTTTCTCTTTTCTTTTTTATCCCTATACCCCT
CTCCCCCCTTCTTTTTCCTTTTCTCTCCCCCCTCCCCTTTTTTATATTTA
CAAACTCCATTTTTTTCTTCACCTCCCTCTTTCCGCTCGCTCTTTTTGTA
CCTTTTTTTGTTTAACCCCCCATTACTTTACAGACACCCATACGGTCGAT
ATACGGCCTTGGCCCTAAATACCACGCCGTTCTCAGTCCCCTTATCCCCC
CCTTTTGTTTTCGTTTTACACTCTTTTGTTCCCTCTTTATCTTGCGCCTT
CTCATATTATTCGCGTCGTCGTAGCCTGTGCGGTTATTGCCCGTTTTCCC
CCCCCCGGGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_j09.g1 MSMg01no150_j09.g1 CHROMAT_FILE:
MSMg01no150_j09.g1 PHD_FILE: MSMg01no150_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:11 2005
         (340 letters)



>mm_chr15_67190354_67191095
          Length = 742

 Score =  540 bits (279), Expect = e-158
 Identities = 317/331 (95%), Gaps = 6/331 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttggctggtgaagggaaatgaagtcattctgagagctgtggttcttccttggaggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttggctggtgaagggaaatgaagtcattctgagagctgtggttcttccttggaggtct 260

                                                                       
Query: 61  acttggagctagcgg-gtctttctccaggcttctgaaagcctaggctagaggtagcagtc 119
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttggagctag-ggagtctttctccaggcttctgaaagcctaggctagaggtagcagtc 319

                                                                       
Query: 120 ataggtaagttagaggacacaggtgtgagctccagaaagcattccacctgcagccagagg 179
           ||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||
Sbjct: 320 ataggtaagttagaggacacaggtgtgagctccggagagcatcccacccgcagccagagg 379

                                                                       
Query: 180 aggctgttctagattagaaggtcaatagccatcctctaagaggatcacagtgtagaagat 239
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 aggctgttctagattagaaggtcaatagccatcctctgagaggatcacagtgtagaagat 439

                                                                       
Query: 240 gtgaactctaggctc---ttaacactccggtatcttaagggtaaatttcttaaaatctta 296
           |||| | ||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgatc-ctaggctcaatttaacactccggtatcttaagggtaaatttcttaaaatctta 498

                                          
Query: 297 ctttctattattccattgtgtgtgcgtgtgt 327
           ||||||||||||||| |||||||| ||||||
Sbjct: 499 ctttctattattccagtgtgtgtgtgtgtgt 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 742
Length adjustment: 9
Effective length of query: 331
Effective length of database: 733
Effective search space:   242623
Effective search space used:   242623
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)