BAC Information

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BAC

Clone NameMSMg01-150O14
Chromosome15 (Build37)
Map Location 73,192,279 - 73,192,617
singlet/doubletsinglet
Overlap genePtk2
Upstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2
Downstream geneLOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276, LOC100040966, EG666113, LOC100041307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150O14.T7 (MSMg01no150_o14.b1)MSMg01-150O14.TJ (MSMg01no150_o14.g1)
ACCAG353222AG353223
length732733
length of high quality
(start - end)
343 (43 - 385)338 (77 - 414)
definitionCHROMAT_FILE: MSMg01no150_o14.b1 PHD_FILE: MSMg01no150_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:35 2005CHROMAT_FILE: MSMg01no150_o14.g1 PHD_FILE: MSMg01no150_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATCGGTGTACTAAAACCAGAAACTGGGTCCATCCTGTCCTTTCTTCC
CATTCCCTCCTCTCAGAGTTGTACTTGTCTTCTCCACTGTCCTGCCAGTG
CTCCATCCTCCTCATCCCTTGCCTGGGCCACTCTTTATTTTGTTCTGGAA
GTCCTGAGGCTGTTATCAAGTTAGGCTCAAATGGTTCTTGGATTGGCTGG
GTGGCTCAGAGTCCCTATATCTAGCTGAGCATATGGTCCTTCTTCTAGCA
GGGCTTCTCCTCCCGTGTCTGTGCCCTCTTGGCGGAGGCCTAGCAGTCGT
GTTGCTCTAGCTCAGAGGGTGCCTTGAATAGTTAGCGCAGTGCGTGTGGA
GTGGAGTCTCCCCCCCCCCAGTAACTGGTGGTGGTTTCTGAGAGCCGTAA
GTTCTCAGTAGTCTCACCCTTACTTGCATGACTTGTGCACCTCTTGGAGA
TGACTATGCTCCTGTGCTAACACAGATGCCCTTGCTTGCTCGCCTTACTT
CTTATTGTATCGCAGTACACTTTTGCCACTGACCCTTTCTCCCTTTTTAC
CGATTTCTGTCCATACTGTCCTTTTGCATCTGTTGACTCTTTTGCCCTCT
TCCGTCCTTCTATTCTGTTTATACTCTCATCTTGTTCCCTTTTTTTTTTA
ATCGCCCCTAATATCCTTTTTCTCCCCCCTTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCGAATGGCTGAGAAGCACTTAAA
TGTTCAACATCGCTAGTCATCAGGGAAACGCAAATCAAAACAACCCTGAG
ATTCCTCCTTACACCAGCCAGAATGGCTAAGATCAAAAACTCAGGTGACA
GCAGATACTGGCGAGGATGTGGAGAAAGAGGAACACTCCACTATTGCTGG
TGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCT
CAGAAAATTGGAAATAGTTCTACCTGAAGATCCAGCTATACCACTCCTGG
GCATATACCCAAAAGATGTTTCAACATATAACAAGGACACATGTTCCACT
ATGTTCATAGCAGCCCCACCCACAATAGCCAGAAGCTGGAAAGAACCCAG
ATGTCCCTCAATAGAGGAATGAATACAGAAAATGTGGCGCATTTACACAA
TGGAGTACTACTCAGCTATTACAAACAATGACTTCTTGCAATTCCCAGGC
CCATGGGTAGAACTTGAAAACATCATCCCGATCGAGGTAACCCAGTCACA
CCACAACACCCATGGTACGCACTCACTGATAAGTGCATATTAGCCCAAAC
GAAGCTCAGAATACCCACAATACAACTCACAGACCATATGAAACCCAAGA
AGAAAGACTACCTCAAAGTGTGGCCGCCACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_o14.b1 MSMg01no150_o14.b1 CHROMAT_FILE:
MSMg01no150_o14.b1 PHD_FILE: MSMg01no150_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:35 2005
         (343 letters)



>mm_chr15_73192075_73192817
          Length = 743

 Score =  601 bits (311), Expect = e-176
 Identities = 332/339 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatcggtgtactaaaaccagaaactgggtccatcctgtcctttcttcccattcc 64
           |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 543 gaattccatcggtggattaaaaccagaaactgggtccatcctgtcctgtcttcccattcc 484

                                                                       
Query: 65  ctcctctcagagttgtacttgtcttctccactgtcctgccagtgctccatcctcctcatc 124
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 483 ctcctctcagagttgtacttgtcgtctccactgtcctgccagtgctccatcctcctcatc 424

                                                                       
Query: 125 ccttgcctgggccactctttattttgttctggaagtcctgaggctgttatcaagttaggc 184
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccttgcctggaccactctttattttgttctggaagtcctgaggctgttatcaagttaggc 364

                                                                       
Query: 185 tcaaatggttcttggattggctgggtggctcagagtccctatatctagctgagcatatgg 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 363 tcaaatggttcttggattggctgggtagctcagagtccctatatctagctgagcatatgg 304

                                                                       
Query: 245 tccttcttctagcagggcttctcctcccgtgtctgtgccctcttggcggaggcctagcag 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tcctccttctagcagggcttctcctcccgtgtctgtgccctcttggcggaggcctagcag 244

                                                  
Query: 305 tcgtgttgctctagctcagagggtgccttgaatagttag 343
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tcgtgttgctctagctcagagggtgccttgaatagttag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)