BAC Information

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BAC

Clone NameMSMg01-151O13
Chromosome15 (Build37)
Map Location 91,971,904 - 91,972,395
singlet/doubletsinglet
Overlap geneCntn1
Upstream geneAbcd2, LOC545126, Slc2a13, Lrrk2, Muc19, Smgc, LOC100042529
Downstream genePdzrn4, LOC100042552
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151O13.T7 (MSMg01no151_o13.b1)MSMg01-151O13.TJ (MSMg01no151_o13.g1)
ACCAG353943AG353944
length739740
length of high quality
(start - end)
58 (123 - 180)496 (72 - 567)
definitionCHROMAT_FILE: MSMg01no151_o13.b1 PHD_FILE: MSMg01no151_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:51 2005CHROMAT_FILE: MSMg01no151_o13.g1 PHD_FILE: MSMg01no151_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCTCCAAGATTCACCTGACATCTGCTTCTGATATGGAAGCTTTCAGCC
CCCACACGGGAAGTAGAGCAGCTGTAGCAATGTGTGGGTGTCATTTACTA
CTGAGCCTGAAACGCCACTTCTGCTGACTCACAGGGCAAGCAAACATGAC
AGAGGTTAGATTCAGGTTGATCAGCCAGGAAACAAGGGCCACTGCAGGCC
ATCTTGTAGGCCAGCGTCCCCAGTCTTCTTGCTATTACTGCTATTAAACA
ACCTACTGGCCATGTAGTATTATATTTTGTAAAAAAGGATTCTTTATACT
GGCATCTTTTGTTTTTGTTCATATACATATATATGCTGCCATTACTCGCA
TAACCCTGGATCCCCCCCATTTTATTATGCATTTCCGGCGTCTCATTCGC
CCCCACTTTTTCGCCCGTTCCCCCCTCCTAAACCACCTTGCCCGTTCTTG
CCCCCCTGACCCCCGTTCCCCCATATCTCCCACCCCGTTCCTCTCCCCCC
TTGCTCTATTTTTCCCCTGTCTTTTTCCTTGCCCCCCCCTAACCCCCCCC
CCCATTTTCTCCGCTCTTTCCTACCCCTTCCCATTTCCGACCCCCTTTCC
ATCCCCTACCGCCGCTACCCCCCTTTCTCCCCCCCTTTCCCCCCTCTTCC
TCCCATCTATTCCCCCCCCCCCTTTTCCCTTCCCCTAGT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTGACATGCCAGATCAAACTATTGGAC
TGGTTGAAAATTTCTGGAGAAGAAATTGAGAGGTTTCTTTCCCTTAGGTC
TTTCAGTGTTTCAGTAGAACACATAGAAAGGAAGTAGCTGAGAAGAAAGA
GGCAAAGATGGAGGGTTTCCAAAAGCCAGGTGAAGAGACATTCCTGGAAG
GGGCTGGTGACTCTGTGAGACAGCTACCAACAGGCAGAAGGAAGGACTGG
GCCAGAGCCATCTCTATCCTTTATTACTTTGCCTAAATGATTTTTTTAAC
CATCTCCACTTAACATTTCTCACATTATAAAACCTCTTCTTGTTTGTTTG
CTTGTTTGGCTCTTTGTTTTAGAGACAGGGTCTCTGTAGAACCTTAGCTT
GCCAGGGACTCAGTATGTATACTAGGCTGGCCAGACTCACAGAGATGAGC
CAGACCTTGCTTCCTGGGTTTTAGGATTAAAGGCATGCACCTCCGTTCCT
GCCCTCAGTGTCAGTTCTGAACATATCCTGTGTCTTCCTCATAAAACCTG
CTTCTTCAAAGAATTGCTTTCATCTTTAACGCTAGAGAGAAAAAGAAAAA
CCATGCGCAATTCTACCTCCAGCCAGCATCTCCCTTAAAGGCAGCCCTAA
CTGACTGCCTTGTCCTGGCCAACCAAAGTCCTACCCAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_o13.g1 MSMg01no151_o13.g1 CHROMAT_FILE:
MSMg01no151_o13.g1 PHD_FILE: MSMg01no151_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:51 2005
         (496 letters)



>mm_chr15_91971704_91972595
          Length = 892

 Score =  905 bits (468), Expect = 0.0
 Identities = 488/496 (98%), Gaps = 4/496 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgacatgccagatcaaactattggactggttgaaaatttctggagaagaaattgaga 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||
Sbjct: 201 atttgacatgccagatcaaactattgcactggttgaaaatttctggagaagaaat--aga 258

                                                                       
Query: 61  ggtttctttcccttaggtctttcagtgtttcagtagaacacatagaaaggaagtagctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggtttctttcccttaggtctttcagtgtttcagtagaacacatagaaaggaagtagctga 318

                                                                       
Query: 121 gaagaaagaggcaaagatggagggtttccaaaagccaggtgaagagacattcctggaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 319 gaagaaagaggcaaagatggagggtttccaaaagccaggtgaagagacattccaggaagg 378

                                                                       
Query: 181 ggctggtgactctgtgagacagctaccaacaggcagaaggaaggactgggccagagccat 240
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggctggtgactctg--agacagctaccaacaggcagaaggaaggactgggccagagccat 436

                                                                       
Query: 241 ctctatcctttattactttgcctaaatgatttttttaaccatctccacttaacatttctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctctatcctttattactttgcctaaatgatttttttaaccatctccacttaacatttctc 496

                                                                       
Query: 301 acattataaaacctcttcttgtttgtttgcttgtttggctctttgttttagagacagggt 360
           |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 497 acattacaaaacctcttcttgtttgtttgcttgtttggttctttgttttagagacagggt 556

                                                                       
Query: 361 ctctgtagaaccttagcttgccagggactcagtatgtatactaggctggccagactcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ctctgtagaaccttagcttgccagggactcagtatgtatactaggctggccagactcaca 616

                                                                       
Query: 421 gagatgagccagaccttgcttcctgggttttaggattaaaggcatgcacctccgttcctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gagatgagccagaccttgcttcctgggttttaggattaaaggcatgcacctccgttcctg 676

                           
Query: 481 ccctcagtgtcagttc 496
           ||||||||||||||||
Sbjct: 677 ccctcagtgtcagttc 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 892
Length adjustment: 10
Effective length of query: 486
Effective length of database: 882
Effective search space:   428652
Effective search space used:   428652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)