BAC Information

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BAC

Clone NameMSMg01-152D08
Chromosome15 (Build37)
Map Location 70,189,703 - 70,190,272
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152D08.T7 (MSMg01no152_d08.b1)MSMg01-152D08.TJ (MSMg01no152_d08.g1)
ACCAG354157AG354158
length728722
length of high quality
(start - end)
613 (52 - 664)570 (79 - 648)
definitionCHROMAT_FILE: MSMg01no152_d08.b1 PHD_FILE: MSMg01no152_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:14 2005CHROMAT_FILE: MSMg01no152_d08.g1 PHD_FILE: MSMg01no152_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTATTGCCCCTCGTATTACACTATCTCTTTGAGTAAAA
GTTAGGTCACTGCCCTTCACAGGAATTTACCATCACTAAGGAAGAAAAAC
GTTTCTGACCGTAGGAGAAACCAGAATAGATATTTAGAATTATAGCTGAG
TTACACCTATCTATATACAGGAATTTACAATGGTTTTGGAAGTAGATCCG
GCTGTGGCTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAAGGG
AACTCCCTAGTTAGAACCATGACTTGGGTGTAAAAGCCCTTGCCCTAGGA
GTGAAAAGTTCTCACACCTGGCTTCTAAGACTATAGTTGACCTTAGATAG
GGCTGACTCTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTGC
ATTTTCATTTCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCT
CATTTGTACTTTGTGGGTATGTCACCCAACTACCTTGTTGTCTTCTGCAT
AAAACGTCTGATGTTCGATTTGAAAAATTACATTCAGATTCCACACAAAC
TCTCCTGCGTGTGTGTCTGTCTGTCATTCATCCACGCTTTGCCCACTCGC
GTCGAGAGACCCTCATTCCACGCAGATACAGGGACCCAGAAGGTCTGCGG
CAGCTTCTGTCCATTATCTTGGTGCCAN
NTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATTTAATTGAAAGGCCATT
GCCTTAATGAATAAGGTAAGAGGTAATCCGCATCTCCAGGAGTGGTACCC
TGATGCACATAGCAACTCATGCACTCATGCATCTCTAGGGTTATAGGGGC
TGTGTGCTCTTTATCTAACTGTTGGCTGGAAATATCCTGGACTGTACTCC
CTTTCCATATGCCCTTATAAGGTTCCTTCCCTTGGCATCAGCTACTGCTT
CAATGTGTTAAAGGGGTCAGGGGGATTGACATGTGTAGGCTGGTATAAGA
AACTTCAAAGCTTGGGGAAAAGTACCATCAGCTGAGTTGCTCTAAGTATT
TCTCAGTATTTAAGCACAACACAAAACATATCCTCTACTCATTTGCGTGG
AGGATGGCACATTCTTGAGATTTTGCAGCTCTTAATTTTAATTAAGTATT
TTACTTATTTACAGCCCTAATGTTGCTCTCCCTCCTCATCCCCCTTCCCA
TTGTTTTTGACCTTTTCCCCCTCCCCTTTGCTTTTGAGCAGGTACTCCCC
ACTTCCCCTGGCAATTATCTATAGGATTAGGCACATCCTTTCTCACTGTT
ACATATGTGCTGGAGTCCATAGACCCATCAATGTCTGCTCTTTTGAAAGA
TGTTTACTGTTATTCTTCACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_d08.g1 MSMg01no152_d08.g1 CHROMAT_FILE:
MSMg01no152_d08.g1 PHD_FILE: MSMg01no152_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:15 2005
         (570 letters)



>mm_chr15_70189503_70190472
          Length = 970

 Score = 1048 bits (542), Expect = 0.0
 Identities = 563/570 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatttaattgaaaggccattgccttaatgaataaggtaagaggtaatccgcatctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatttaattgaaaggccattgccttaatgaataaggtaagaggtaatccgcatctcca 260

                                                                       
Query: 61  ggagtggtaccctgatgcacatagcaactcatgcactcatgcatctctagggttataggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagtggtaccctgatgcacatagcaactcatgcactcatgcatctctagggttataggg 320

                                                                       
Query: 121 gctgtgtgctctttatctaactgttggctggaaatatcctggactgtactccctttccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgtgtgctctttatctaactgttggctggaaatatcctggactgtactccctttccat 380

                                                                       
Query: 181 atgcccttataaggttccttcccttggcatcagctactgcttcaatgtgttaaaggggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcccttataaggttccttcccttggcatcagctactgcttcaatgtgttaaaggggtc 440

                                                                       
Query: 241 agggggattgacatgtgtaggctggtataagaaacttcaaagcttggggaaaagtaccat 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggggattgacacgtgtaggctggtataagaaacttcaaagcttggggaaaagtaccat 500

                                                                       
Query: 301 cagctgagttgctctaagtatttctcagtatttaagcacaacacaaaacatatcctctac 360
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 501 cagctgagttgctctaagtatttctcaatatttaagcacaacgcaaaacatatcctctac 560

                                                                       
Query: 361 tcatttgcgtggaggatggcacattcttgagattttgcagctcttaattttaattaagta 420
           ||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 561 tcatttgggtggaagatggcacattcttgagattttgcagttcttatttttaattaagta 620

                                                                       
Query: 421 ttttacttatttacagccctaatgttgctctccctcctcatcccccttcccattgttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttacttatttacagccctaatgttgctctccctcctcatcccccttcccattgttttt 680

                                                                       
Query: 481 gaccttttccccctcccctttgcttttgagcaggtactccccacttcccctggcaattat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaccttttccccctcccctttgcttttgagcaggtactccccacttcccctggcaattat 740

                                         
Query: 541 ctataggattaggcacatcctttctcactg 570
           ||||||||||||||||||||||||||||||
Sbjct: 741 ctataggattaggcacatcctttctcactg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)